| TF name | Position | PWM scan score |
| ArcA | 142-202 | 33.655 |
| ArgR | 172-187 | 24.371 |
| AgaR | 178-201 | 21.948 |
| CysB | 119-160 | 20.848 |
| DcuR | 135-189 | 19.243 |
| OxyR | 162-206 | 17.939 |
| Rob | 2-22 | 17.004 |
| OmpR | 4-23 | 16.504 |
| H-NS | 6-20 | 16.272 |
| MarA | 29-49 | 16.232 |
| Mlc | 297-319 | 16.125 |
| CRP | 146-167 | 15.719 |
| GntR | 149-168 | 14.917 |
| PspF | 4-20 | 14.664 |
| PhoP | 159-175 | 13.876 |
| PhoB | 5-24 | 13.428 |
| SoxS | 289-306 | 13.422 |
| TorR | 157-166 | 13.235 |
| IHF | 176-188 | 13.075 |
| Fis | 169-189 | 12.776 |
| TyrR | 1-22 | 12.732 |
| FNR | 101-122 | 12.290 |
| UlaR | 176-195 | 12.036 |
| MetJ | 149-156 | 11.820 |
| GadE | 142-161 | 11.753 |
| CpxR | 300-314 | 11.605 |
| MetR | 150-173 | 11.505 |
| Lrp | 142-153 | 11.463 |
| GcvA | 198-226 | 11.344 |
| GalR | 356-371 | 11.203 |
| GalS | 356-371 | 11.203 |
| CytR | 3-42 | 11.085 |
| ArgP | 6-18 | 10.853 |
| Nac | 3-17 | 10.834 |
| RcsB | 173-186 | 10.508 |
| UxuR | 17-34 | 9.739 |
| Ada | 163-190 | 9.689 |
| NagC | 155-177 | 9.640 |
| Fur | 80-94 | 9.348 |
| NarL | 297-303 | 9.333 |
| GlpR | 313-332 | 9.244 |
| PurR | 355-370 | 8.819 |
| ModE | 143-169 | 8.649 |
| NtrC | 2-18 | 8.577 |
| DeoR | 191-206 | 7.977 |
| XylR | 288-305 | 7.657 |
| FruR | 288-305 | 7.554 |
| AraC | 170-187 | 7.298 |
| NorR | 162-178 | 6.740 |
| MelR | 213-230 | 6.698 |
| IdnR | 171-186 | 6.447 |
| MalT | 58-67 | 6.314 |
| FhlA | 40-79 | 6.047 |
| DnaA | 9-17 | 5.711 |