| TF name | Position | PWM scan score |
| CysB | 355-396 | 23.321 |
| ArcA | 27-87 | 22.038 |
| PhoP | 161-177 | 19.900 |
| FNR | 356-377 | 19.577 |
| Fur | 21-35 | 19.044 |
| OmpR | 358-377 | 18.224 |
| UlaR | 39-58 | 17.741 |
| CytR | 6-45 | 16.865 |
| NagC | 170-192 | 16.722 |
| OxyR | 148-192 | 16.677 |
| Nac | 163-177 | 16.017 |
| Fis | 21-41 | 15.410 |
| CRP | 353-374 | 15.259 |
| SoxS | 314-331 | 15.127 |
| GcvA | 103-131 | 14.884 |
| XylR | 322-339 | 14.618 |
| MetR | 34-57 | 13.699 |
| MarA | 21-41 | 13.695 |
| ModE | 269-295 | 13.413 |
| DcuR | 342-396 | 13.203 |
| GntR | 104-123 | 12.976 |
| IHF | 365-377 | 12.386 |
| H-NS | 85-99 | 12.302 |
| FhlA | 355-394 | 12.009 |
| GadE | 83-102 | 11.848 |
| TorR | 77-86 | 11.843 |
| GlpR | 370-389 | 11.804 |
| Rob | 27-47 | 11.746 |
| Mlc | 168-190 | 11.286 |
| NorR | 212-228 | 11.034 |
| DnaA | 331-339 | 10.881 |
| RcsB | 118-131 | 10.871 |
| PhoB | 29-48 | 10.505 |
| FadR | 119-135 | 10.456 |
| AraC | 219-236 | 10.407 |
| AgaR | 76-99 | 10.328 |
| Ada | 149-176 | 10.320 |
| Lrp | 164-175 | 10.307 |
| ArgP | 169-181 | 10.282 |
| MelR | 96-113 | 10.106 |
| DeoR | 92-107 | 9.856 |
| MetJ | 171-178 | 9.765 |
| ArgR | 80-95 | 9.525 |
| IdnR | 157-172 | 9.482 |
| GalS | 346-361 | 9.422 |
| GalR | 346-361 | 9.422 |
| RhaS | 21-37 | 8.736 |
| TyrR | 78-99 | 8.170 |
| UxuR | 122-139 | 7.768 |
| CpxR | 162-176 | 7.426 |
| LexA | 102-121 | 7.073 |
| PspF | 266-282 | 6.955 |
| NarL | 108-114 | 6.540 |
| LacI | 119-139 | 6.076 |
| MalT | 21-30 | 6.014 |
| NtrC | 132-148 | 5.326 |