| TF name | Position | PWM scan score |
| ArcA | 331-391 | 28.116 |
| CysB | 174-215 | 19.879 |
| OmpR | 358-377 | 16.759 |
| OxyR | 326-370 | 15.650 |
| NtrC | 315-331 | 15.471 |
| ArgP | 89-101 | 15.331 |
| CytR | 347-386 | 15.090 |
| RcsB | 205-218 | 14.898 |
| AgaR | 360-383 | 14.734 |
| Nac | 377-391 | 14.212 |
| CpxR | 370-384 | 14.130 |
| NagC | 359-381 | 13.553 |
| Mlc | 190-212 | 13.162 |
| Fis | 80-100 | 13.094 |
| Ada | 355-382 | 13.087 |
| H-NS | 367-381 | 12.910 |
| GadE | 302-321 | 12.608 |
| DcuR | 118-172 | 12.424 |
| MarA | 163-183 | 12.232 |
| IHF | 14-26 | 12.047 |
| PhoP | 121-137 | 11.904 |
| SoxS | 293-310 | 11.773 |
| PhoB | 207-226 | 11.566 |
| TyrR | 368-389 | 11.422 |
| CRP | 166-187 | 11.343 |
| GcvA | 354-382 | 11.045 |
| UlaR | 154-173 | 11.034 |
| FNR | 369-390 | 10.868 |
| MetR | 363-386 | 10.770 |
| DeoR | 168-183 | 10.750 |
| Rob | 290-310 | 10.601 |
| IdnR | 117-132 | 10.543 |
| ArgR | 166-181 | 10.487 |
| TrpR | 350-367 | 10.354 |
| FhlA | 324-363 | 10.223 |
| Lrp | 367-378 | 10.162 |
| PspF | 340-356 | 9.980 |
| MelR | 309-326 | 9.941 |
| XylR | 367-384 | 9.940 |
| MalT | 68-77 | 9.728 |
| AraC | 128-145 | 9.483 |
| NorR | 354-370 | 9.426 |
| NarL | 350-356 | 9.376 |
| Fur | 368-382 | 9.348 |
| FadR | 338-354 | 9.341 |
| GalS | 243-258 | 9.011 |
| GalR | 243-258 | 9.011 |
| UxuR | 361-378 | 8.853 |
| GlpR | 210-229 | 8.619 |
| GntR | 74-93 | 8.541 |
| ModE | 212-238 | 8.385 |
| TorR | 27-36 | 8.200 |
| PurR | 131-146 | 7.698 |
| NarP | 118-124 | 7.347 |
| RhaS | 251-267 | 6.982 |
| LexA | 341-360 | 6.445 |
| FruR | 203-220 | 5.853 |
| LacI | 2-22 | 5.817 |
| MetJ | 287-294 | 5.744 |