| TF name | Position | PWM scan score |
| ArcA | 333-393 | 36.638 |
| CysB | 347-388 | 25.019 |
| GadE | 359-378 | 21.743 |
| CytR | 321-360 | 20.634 |
| AgaR | 345-368 | 19.941 |
| OmpR | 49-68 | 19.827 |
| TyrR | 354-375 | 19.004 |
| DcuR | 160-214 | 18.373 |
| Rob | 152-172 | 17.364 |
| NagC | 358-380 | 17.000 |
| PhoB | 378-397 | 16.511 |
| UlaR | 166-185 | 16.508 |
| OxyR | 329-373 | 16.339 |
| Ada | 309-336 | 15.944 |
| FNR | 255-276 | 15.819 |
| PhoP | 365-381 | 15.697 |
| Mlc | 261-283 | 15.673 |
| CpxR | 366-380 | 14.742 |
| H-NS | 300-314 | 14.739 |
| SoxS | 365-382 | 14.588 |
| IdnR | 303-318 | 14.139 |
| Fis | 294-314 | 14.050 |
| ModE | 371-397 | 13.697 |
| CRP | 362-383 | 13.691 |
| MetR | 97-120 | 13.485 |
| PspF | 201-217 | 13.388 |
| IHF | 305-317 | 13.071 |
| XylR | 245-262 | 12.881 |
| Nac | 97-111 | 12.873 |
| GcvA | 356-384 | 12.712 |
| RcsB | 246-259 | 12.566 |
| ArgR | 247-262 | 12.310 |
| UxuR | 336-353 | 12.264 |
| MelR | 371-388 | 12.174 |
| DeoR | 360-375 | 12.062 |
| GlpR | 205-224 | 11.722 |
| NtrC | 286-302 | 11.635 |
| Lrp | 79-90 | 11.439 |
| NorR | 110-126 | 10.762 |
| MarA | 363-383 | 10.562 |
| Fur | 347-361 | 9.951 |
| NarL | 46-52 | 9.376 |
| GalR | 306-321 | 9.139 |
| GalS | 306-321 | 9.139 |
| ArgP | 214-226 | 8.922 |
| CaiF | 215-259 | 8.671 |
| DnaA | 172-180 | 8.492 |
| AraC | 316-333 | 8.396 |
| GntR | 267-286 | 8.219 |
| TorR | 225-234 | 8.093 |
| LexA | 53-72 | 7.687 |
| PurR | 61-76 | 7.436 |
| RhaS | 305-321 | 7.402 |
| FadR | 94-110 | 7.289 |
| LacI | 221-241 | 7.100 |
| NarP | 166-172 | 6.176 |
| FruR | 369-386 | 5.522 |
| MalT | 116-125 | 5.370 |