| TF name | Position | PWM scan score |
| ArcA | 330-390 | 29.485 |
| OxyR | 38-82 | 21.136 |
| OmpR | 351-370 | 20.918 |
| FNR | 105-126 | 20.605 |
| NagC | 157-179 | 19.087 |
| PhoP | 294-310 | 17.788 |
| GcvA | 281-309 | 17.709 |
| CytR | 141-180 | 17.369 |
| CysB | 350-391 | 17.032 |
| CRP | 102-123 | 16.944 |
| GadE | 341-360 | 16.568 |
| PhoB | 357-376 | 15.595 |
| Ada | 349-376 | 15.135 |
| TyrR | 360-381 | 14.696 |
| Fur | 359-373 | 14.134 |
| H-NS | 298-312 | 14.077 |
| PurR | 330-345 | 13.994 |
| Fis | 289-309 | 13.854 |
| Lrp | 64-75 | 13.469 |
| IHF | 351-363 | 13.322 |
| GlpR | 104-123 | 12.902 |
| CpxR | 156-170 | 12.643 |
| Nac | 65-79 | 12.566 |
| AgaR | 306-329 | 12.400 |
| UlaR | 151-170 | 12.305 |
| Mlc | 369-391 | 12.283 |
| IdnR | 193-208 | 12.017 |
| TorR | 243-252 | 11.715 |
| UxuR | 343-360 | 11.455 |
| XylR | 361-378 | 11.454 |
| ModE | 354-380 | 11.210 |
| SoxS | 99-116 | 10.784 |
| GntR | 265-284 | 10.564 |
| MarA | 335-355 | 10.552 |
| PspF | 356-372 | 10.336 |
| LacI | 355-375 | 10.320 |
| ArgP | 245-257 | 9.846 |
| MetJ | 324-331 | 9.682 |
| AraC | 56-73 | 9.625 |
| DnaA | 103-111 | 9.483 |
| DeoR | 322-337 | 9.365 |
| RcsB | 351-364 | 9.363 |
| MetR | 357-380 | 9.306 |
| Rob | 375-395 | 8.646 |
| GalR | 284-299 | 8.443 |
| GalS | 284-299 | 8.443 |
| NarL | 66-72 | 8.131 |
| ArgR | 364-379 | 8.079 |
| NorR | 264-280 | 8.076 |
| MalT | 154-163 | 8.002 |
| DcuR | 310-364 | 7.834 |
| NarP | 73-79 | 7.740 |
| FruR | 347-364 | 7.579 |
| MelR | 182-199 | 7.225 |
| FadR | 239-255 | 6.066 |
| NtrC | 23-39 | 5.013 |