| TF name | Position | PWM scan score |
| ArcA | 335-395 | 30.847 |
| CysB | 232-273 | 23.684 |
| Ada | 200-227 | 19.624 |
| OmpR | 359-378 | 18.233 |
| CytR | 246-285 | 18.067 |
| Mlc | 250-272 | 17.430 |
| Nac | 297-311 | 16.586 |
| H-NS | 361-375 | 16.379 |
| GlpR | 262-281 | 16.325 |
| GcvA | 262-290 | 16.007 |
| AgaR | 240-263 | 15.738 |
| NagC | 252-274 | 15.257 |
| TyrR | 342-363 | 15.176 |
| CRP | 260-281 | 14.966 |
| DcuR | 242-296 | 14.956 |
| PhoP | 367-383 | 14.549 |
| CpxR | 368-382 | 14.506 |
| PspF | 303-319 | 14.086 |
| Fis | 269-289 | 14.016 |
| FNR | 263-284 | 13.614 |
| IHF | 365-377 | 13.389 |
| GntR | 127-146 | 13.305 |
| UxuR | 373-390 | 12.939 |
| ArgP | 372-384 | 12.871 |
| IdnR | 181-196 | 12.712 |
| SoxS | 257-274 | 12.547 |
| OxyR | 231-275 | 12.516 |
| GadE | 173-192 | 12.158 |
| DeoR | 253-268 | 11.640 |
| PhoB | 269-288 | 11.510 |
| RcsB | 368-381 | 11.285 |
| AraC | 153-170 | 10.856 |
| Rob | 359-379 | 10.848 |
| Lrp | 295-306 | 10.719 |
| UlaR | 30-49 | 10.609 |
| Fur | 363-377 | 10.359 |
| PurR | 357-372 | 10.350 |
| TorR | 39-48 | 10.220 |
| ArgR | 38-53 | 10.077 |
| MarA | 30-50 | 10.054 |
| MalT | 162-171 | 9.698 |
| GalR | 357-372 | 9.635 |
| GalS | 357-372 | 9.635 |
| DnaA | 331-339 | 9.246 |
| FruR | 234-251 | 8.812 |
| TrpR | 151-168 | 8.318 |
| MetR | 297-320 | 8.159 |
| MetJ | 66-73 | 8.033 |
| ModE | 189-215 | 7.998 |
| XylR | 104-121 | 7.434 |
| NorR | 191-207 | 7.284 |
| FadR | 163-179 | 7.117 |
| MelR | 105-122 | 6.963 |
| CueR | 143-161 | 6.859 |
| NarL | 351-357 | 6.636 |
| NarP | 136-142 | 6.195 |
| RhaS | 153-169 | 6.035 |
| LacI | 218-238 | 5.290 |