| TF name | Position | PWM scan score |
| ArcA | 147-207 | 26.649 |
| OxyR | 31-75 | 21.645 |
| CysB | 271-312 | 19.463 |
| OmpR | 4-23 | 18.066 |
| NorR | 43-59 | 17.816 |
| CytR | 171-210 | 17.382 |
| FNR | 171-192 | 15.867 |
| ModE | 144-170 | 15.601 |
| NagC | 153-175 | 15.445 |
| SoxS | 35-52 | 15.430 |
| Nac | 155-169 | 14.635 |
| CRP | 168-189 | 14.550 |
| H-NS | 254-268 | 14.413 |
| Fur | 335-349 | 14.197 |
| TrpR | 278-295 | 14.154 |
| Fis | 156-176 | 14.023 |
| Mlc | 234-256 | 13.960 |
| GcvA | 328-356 | 13.531 |
| MarA | 169-189 | 13.031 |
| PhoP | 178-194 | 12.973 |
| IHF | 180-192 | 12.825 |
| UlaR | 253-272 | 11.989 |
| XylR | 15-32 | 11.974 |
| ArgR | 263-278 | 11.825 |
| Rob | 257-277 | 11.528 |
| PhoB | 331-350 | 11.146 |
| GadE | 7-26 | 11.115 |
| RcsB | 174-187 | 10.743 |
| Lrp | 269-280 | 10.733 |
| MelR | 168-185 | 10.625 |
| DeoR | 244-259 | 9.822 |
| DcuR | 109-163 | 9.620 |
| GlpR | 1-20 | 9.615 |
| FadR | 336-352 | 9.567 |
| IdnR | 382-397 | 9.492 |
| CpxR | 189-203 | 9.405 |
| DnaA | 179-187 | 9.246 |
| GntR | 374-393 | 9.227 |
| AraC | 33-50 | 9.226 |
| UxuR | 173-190 | 8.584 |
| PspF | 305-321 | 8.570 |
| MetJ | 114-121 | 8.464 |
| ArgP | 286-298 | 8.370 |
| TyrR | 45-66 | 8.110 |
| FruR | 197-214 | 7.920 |
| AgaR | 361-384 | 7.769 |
| LacI | 85-105 | 7.731 |
| TorR | 158-167 | 7.016 |
| RhaS | 33-49 | 6.756 |
| NarL | 340-346 | 6.540 |
| Ada | 171-198 | 6.335 |
| MetR | 89-112 | 6.333 |
| PurR | 371-386 | 6.192 |
| LexA | 157-176 | 5.890 |
| NarP | 102-108 | 5.632 |