| TF name | Position | PWM scan score |
| ArcA | 32-92 | 29.070 |
| PhoP | 232-248 | 18.998 |
| OxyR | 123-167 | 18.671 |
| CysB | 322-363 | 18.666 |
| GadE | 324-343 | 18.354 |
| XylR | 203-220 | 17.425 |
| FNR | 191-212 | 17.259 |
| H-NS | 57-71 | 16.478 |
| OmpR | 235-254 | 16.118 |
| NagC | 366-388 | 16.060 |
| CytR | 299-338 | 15.570 |
| UlaR | 325-344 | 14.809 |
| ArgR | 36-51 | 14.763 |
| AgaR | 49-72 | 14.726 |
| DcuR | 319-373 | 14.297 |
| ArgP | 145-157 | 14.245 |
| MarA | 42-62 | 13.667 |
| Mlc | 51-73 | 13.471 |
| SoxS | 366-383 | 13.186 |
| IHF | 141-153 | 13.170 |
| CRP | 41-62 | 12.673 |
| FadR | 109-125 | 12.593 |
| Fur | 137-151 | 12.382 |
| GcvA | 137-165 | 12.136 |
| Fis | 271-291 | 12.090 |
| PspF | 134-150 | 11.800 |
| TyrR | 140-161 | 11.792 |
| GalS | 142-157 | 11.695 |
| GalR | 142-157 | 11.695 |
| Lrp | 33-44 | 11.556 |
| UxuR | 326-343 | 11.351 |
| RcsB | 246-259 | 11.191 |
| Rob | 141-161 | 10.928 |
| CpxR | 377-391 | 10.850 |
| PhoB | 70-89 | 10.792 |
| Nac | 199-213 | 10.443 |
| FruR | 85-102 | 10.340 |
| DeoR | 377-392 | 10.331 |
| MetR | 79-102 | 10.324 |
| DnaA | 148-156 | 10.244 |
| ModE | 29-55 | 10.212 |
| FhlA | 210-249 | 9.653 |
| MelR | 358-375 | 9.484 |
| GlpR | 95-114 | 9.471 |
| IdnR | 104-119 | 9.304 |
| NarL | 284-290 | 9.240 |
| Ada | 345-372 | 8.289 |
| LexA | 45-64 | 8.190 |
| NtrC | 229-245 | 8.124 |
| GntR | 96-115 | 7.912 |
| MetJ | 23-30 | 7.524 |
| MalT | 93-102 | 7.403 |
| AraC | 93-110 | 7.235 |
| TorR | 149-158 | 7.068 |
| CaiF | 122-166 | 6.875 |
| NarP | 191-197 | 6.860 |
| NorR | 151-167 | 6.196 |
| PurR | 107-122 | 5.664 |