| TF name | Position | PWM scan score |
| ArcA | 322-382 | 24.662 |
| OmpR | 70-89 | 20.794 |
| MarA | 367-387 | 20.292 |
| CysB | 318-359 | 17.163 |
| FNR | 312-333 | 17.079 |
| Fis | 63-83 | 15.914 |
| Fur | 162-176 | 14.924 |
| CRP | 366-387 | 14.699 |
| H-NS | 81-95 | 14.679 |
| RcsB | 168-181 | 14.262 |
| GcvA | 47-75 | 13.859 |
| GlpR | 356-375 | 13.537 |
| Nac | 151-165 | 12.742 |
| Mlc | 56-78 | 12.625 |
| PhoP | 67-83 | 12.479 |
| AraC | 186-203 | 12.417 |
| IHF | 77-89 | 12.346 |
| ArgR | 66-81 | 12.171 |
| OxyR | 312-356 | 11.932 |
| Lrp | 84-95 | 11.921 |
| PhoB | 374-393 | 11.711 |
| CytR | 51-90 | 11.412 |
| MetJ | 261-268 | 11.400 |
| UxuR | 74-91 | 11.267 |
| SoxS | 369-386 | 11.240 |
| ModE | 59-85 | 11.069 |
| GadE | 68-87 | 11.030 |
| UlaR | 30-49 | 11.011 |
| DeoR | 88-103 | 10.805 |
| TorR | 387-396 | 10.723 |
| GntR | 57-76 | 10.358 |
| CpxR | 88-102 | 10.296 |
| NagC | 171-193 | 10.212 |
| PspF | 56-72 | 9.980 |
| DcuR | 145-199 | 9.979 |
| Rob | 68-88 | 9.796 |
| XylR | 97-114 | 9.535 |
| NarL | 133-139 | 8.728 |
| ArgP | 371-383 | 8.685 |
| TyrR | 176-197 | 8.335 |
| NarP | 162-168 | 7.806 |
| FadR | 207-223 | 7.773 |
| DnaA | 58-66 | 7.617 |
| AgaR | 376-399 | 7.365 |
| GalS | 368-383 | 7.061 |
| GalR | 368-383 | 7.061 |
| MetR | 72-95 | 6.929 |
| FhlA | 202-241 | 6.718 |
| NorR | 58-74 | 6.374 |
| FruR | 66-83 | 6.333 |
| IdnR | 267-282 | 5.913 |
| MelR | 149-166 | 5.792 |
| MalT | 291-300 | 5.645 |
| PurR | 270-285 | 5.601 |
| LexA | 64-83 | 5.433 |