| TF name | Position | PWM scan score |
| ArcA | 330-390 | 36.663 |
| CysB | 291-332 | 25.206 |
| CytR | 330-369 | 21.765 |
| GcvA | 126-154 | 21.332 |
| OxyR | 14-58 | 19.919 |
| PhoP | 289-305 | 18.043 |
| AgaR | 354-377 | 17.642 |
| OmpR | 351-370 | 17.278 |
| FNR | 130-151 | 16.854 |
| Nac | 353-367 | 15.859 |
| NagC | 296-318 | 15.539 |
| TyrR | 237-258 | 15.349 |
| CRP | 318-339 | 14.788 |
| CpxR | 29-43 | 14.685 |
| Mlc | 357-379 | 14.676 |
| DcuR | 345-399 | 14.563 |
| RcsB | 296-309 | 14.502 |
| PhoB | 347-366 | 14.424 |
| IHF | 136-148 | 14.076 |
| Fur | 296-310 | 13.963 |
| MarA | 178-198 | 13.881 |
| H-NS | 354-368 | 13.840 |
| Fis | 243-263 | 13.268 |
| GalR | 329-344 | 13.203 |
| GalS | 329-344 | 13.203 |
| AraC | 118-135 | 13.202 |
| DeoR | 94-109 | 12.382 |
| IdnR | 147-162 | 12.363 |
| UxuR | 285-302 | 12.348 |
| TorR | 117-126 | 12.289 |
| XylR | 21-38 | 12.270 |
| Rob | 321-341 | 12.152 |
| Lrp | 157-168 | 12.010 |
| GntR | 32-51 | 11.934 |
| Ada | 1-28 | 11.700 |
| PspF | 342-358 | 11.595 |
| MelR | 221-238 | 11.446 |
| UlaR | 353-372 | 11.182 |
| SoxS | 340-357 | 11.075 |
| NorR | 188-204 | 10.856 |
| ModE | 107-133 | 10.328 |
| MetR | 340-363 | 9.615 |
| GlpR | 200-219 | 9.595 |
| NarL | 159-165 | 9.580 |
| ArgP | 117-129 | 9.519 |
| ArgR | 369-384 | 9.504 |
| DnaA | 290-298 | 9.246 |
| GadE | 37-56 | 9.220 |
| FadR | 268-284 | 8.685 |
| NarP | 216-222 | 8.306 |
| FhlA | 263-302 | 8.058 |
| FruR | 19-36 | 7.908 |
| MetJ | 361-368 | 7.710 |
| RhaS | 202-218 | 7.579 |
| PurR | 329-344 | 7.289 |
| LexA | 369-388 | 6.829 |
| LacI | 50-70 | 5.478 |