| TF name | Position | PWM scan score |
| ArcA | 77-137 | 27.833 |
| FNR | 68-89 | 18.884 |
| GadE | 76-95 | 18.083 |
| NagC | 74-96 | 16.512 |
| CysB | 176-217 | 16.203 |
| MetR | 240-263 | 15.899 |
| PhoB | 255-274 | 15.732 |
| Ada | 315-342 | 15.675 |
| Nac | 75-89 | 14.982 |
| OmpR | 75-94 | 14.748 |
| IdnR | 369-384 | 14.300 |
| AraC | 68-85 | 14.040 |
| Fur | 83-97 | 13.956 |
| IHF | 68-80 | 13.765 |
| CytR | 153-192 | 13.414 |
| SoxS | 62-79 | 13.368 |
| CRP | 77-98 | 13.305 |
| Rob | 74-94 | 12.953 |
| ArgR | 245-260 | 12.773 |
| H-NS | 173-187 | 12.768 |
| ModE | 77-103 | 12.638 |
| UlaR | 80-99 | 12.494 |
| GcvA | 82-110 | 12.400 |
| PhoP | 73-89 | 12.233 |
| Mlc | 73-95 | 12.133 |
| Fis | 68-88 | 12.004 |
| CpxR | 151-165 | 11.881 |
| DcuR | 317-371 | 11.732 |
| XylR | 66-83 | 11.350 |
| Lrp | 330-341 | 11.152 |
| OxyR | 90-134 | 10.960 |
| MelR | 275-292 | 10.892 |
| GntR | 335-354 | 10.817 |
| TorR | 29-38 | 10.436 |
| ArgP | 300-312 | 10.240 |
| MetJ | 32-39 | 10.171 |
| RcsB | 68-81 | 9.900 |
| NorR | 82-98 | 9.604 |
| MarA | 318-338 | 9.488 |
| DeoR | 177-192 | 9.388 |
| PspF | 108-124 | 9.342 |
| NarL | 91-97 | 8.932 |
| DnaA | 213-221 | 8.349 |
| TyrR | 171-192 | 8.196 |
| FruR | 132-149 | 7.741 |
| GlpR | 79-98 | 7.727 |
| MalT | 367-376 | 7.632 |
| LexA | 169-188 | 7.427 |
| UxuR | 97-114 | 6.546 |
| NtrC | 260-276 | 6.437 |
| NarP | 370-376 | 5.835 |
| GalR | 84-99 | 5.791 |
| GalS | 84-99 | 5.791 |
| FadR | 7-23 | 5.679 |
| AgaR | 146-169 | 5.514 |