| TF name | Position | PWM scan score |
| ArcA | 119-179 | 24.141 |
| CytR | 140-179 | 19.146 |
| OmpR | 298-317 | 17.609 |
| CysB | 295-336 | 17.465 |
| RcsB | 298-311 | 17.158 |
| NagC | 48-70 | 16.347 |
| AgaR | 16-39 | 16.152 |
| TyrR | 297-318 | 14.400 |
| XylR | 296-313 | 14.317 |
| IHF | 108-120 | 13.855 |
| GadE | 34-53 | 13.724 |
| DcuR | 282-336 | 13.703 |
| Fur | 18-32 | 13.390 |
| FNR | 32-53 | 13.169 |
| H-NS | 351-365 | 12.696 |
| Rob | 59-79 | 12.617 |
| CRP | 306-327 | 12.447 |
| ArgP | 302-314 | 12.028 |
| UlaR | 21-40 | 11.740 |
| CpxR | 108-122 | 11.704 |
| Mlc | 46-68 | 11.582 |
| Lrp | 135-146 | 11.532 |
| Nac | 173-187 | 11.089 |
| PhoP | 358-374 | 10.839 |
| GlpR | 306-325 | 10.825 |
| PhoB | 24-43 | 10.713 |
| Ada | 139-166 | 10.683 |
| FadR | 209-225 | 10.406 |
| OxyR | 350-394 | 10.355 |
| ArgR | 299-314 | 10.205 |
| Fis | 354-374 | 10.203 |
| GntR | 6-25 | 10.021 |
| ModE | 142-168 | 9.942 |
| NorR | 325-341 | 9.859 |
| LexA | 55-74 | 9.784 |
| SoxS | 190-207 | 9.756 |
| RhaS | 343-359 | 9.747 |
| MetR | 130-153 | 9.636 |
| AraC | 181-198 | 9.130 |
| NarL | 334-340 | 8.928 |
| UxuR | 354-371 | 8.779 |
| MarA | 139-159 | 8.378 |
| MetJ | 287-294 | 8.349 |
| FruR | 167-184 | 8.282 |
| GcvA | 193-221 | 8.239 |
| TorR | 247-256 | 8.052 |
| NarP | 211-217 | 7.965 |
| DnaA | 305-313 | 7.532 |
| PspF | 294-310 | 7.462 |
| LacI | 125-145 | 7.288 |
| DeoR | 367-382 | 7.092 |
| CaiF | 266-310 | 7.078 |
| PurR | 120-135 | 7.075 |
| FhlA | 297-336 | 6.838 |
| IdnR | 117-132 | 6.796 |
| MelR | 372-389 | 6.628 |
| MalT | 233-242 | 6.558 |
| NtrC | 348-364 | 6.212 |