| TF name | Position | PWM scan score |
| ArcA | 129-189 | 32.127 |
| OxyR | 151-195 | 25.118 |
| CysB | 150-191 | 24.435 |
| UlaR | 313-332 | 19.816 |
| SoxS | 365-382 | 17.148 |
| OmpR | 49-68 | 16.902 |
| Nac | 148-162 | 16.109 |
| FNR | 3-24 | 15.636 |
| Fis | 375-395 | 15.490 |
| AgaR | 109-132 | 15.432 |
| RcsB | 174-187 | 15.262 |
| IdnR | 106-121 | 14.965 |
| CytR | 153-192 | 14.955 |
| Mlc | 152-174 | 14.806 |
| Fur | 150-164 | 14.777 |
| PspF | 371-387 | 14.664 |
| H-NS | 383-397 | 14.543 |
| NagC | 183-205 | 14.530 |
| MarA | 363-383 | 14.231 |
| GntR | 356-375 | 14.065 |
| PhoP | 369-385 | 13.802 |
| GcvA | 330-358 | 13.745 |
| GadE | 370-389 | 13.263 |
| Rob | 45-65 | 13.017 |
| ModE | 252-278 | 12.704 |
| TyrR | 93-114 | 12.450 |
| XylR | 173-190 | 12.438 |
| IHF | 174-186 | 12.266 |
| MetJ | 345-352 | 12.104 |
| PhoB | 372-391 | 12.099 |
| ArgP | 169-181 | 12.092 |
| CpxR | 176-190 | 12.013 |
| TorR | 149-158 | 11.647 |
| Lrp | 181-192 | 11.411 |
| CRP | 102-123 | 11.362 |
| PurR | 43-58 | 11.295 |
| ArgR | 172-187 | 10.993 |
| MetR | 199-222 | 10.732 |
| MelR | 317-334 | 10.078 |
| LexA | 166-185 | 9.988 |
| DnaA | 148-156 | 9.731 |
| NorR | 29-45 | 9.520 |
| NarL | 151-157 | 9.376 |
| DeoR | 213-228 | 9.311 |
| GlpR | 377-396 | 8.949 |
| UxuR | 49-66 | 8.826 |
| CaiF | 149-193 | 8.711 |
| DcuR | 136-190 | 8.496 |
| GalR | 220-235 | 7.373 |
| GalS | 220-235 | 7.373 |
| FruR | 189-206 | 7.341 |
| TrpR | 167-184 | 7.059 |
| RhaS | 342-358 | 6.777 |
| AraC | 168-185 | 6.726 |
| NarP | 120-126 | 6.657 |
| LacI | 180-200 | 6.556 |
| FadR | 74-90 | 5.963 |