| TF name | Position | PWM scan score |
| ArcA | 330-390 | 26.863 |
| XylR | 129-146 | 21.574 |
| CysB | 358-399 | 18.088 |
| GcvA | 363-391 | 16.675 |
| OxyR | 332-376 | 16.610 |
| H-NS | 375-389 | 15.199 |
| ArgP | 371-383 | 14.692 |
| NagC | 362-384 | 14.563 |
| Fis | 365-385 | 14.528 |
| OmpR | 375-394 | 14.016 |
| DeoR | 70-85 | 13.797 |
| Nac | 364-378 | 13.748 |
| Fur | 12-26 | 13.741 |
| MelR | 277-294 | 13.693 |
| FNR | 357-378 | 13.677 |
| ModE | 366-392 | 13.580 |
| SoxS | 359-376 | 12.984 |
| CytR | 336-375 | 12.970 |
| PspF | 9-25 | 12.750 |
| CpxR | 374-388 | 12.696 |
| AgaR | 354-377 | 12.490 |
| Mlc | 279-301 | 12.402 |
| PhoP | 71-87 | 12.381 |
| GlpR | 365-384 | 12.194 |
| UlaR | 211-230 | 12.192 |
| CRP | 57-78 | 11.967 |
| Lrp | 360-371 | 11.375 |
| GadE | 134-153 | 11.185 |
| NorR | 209-225 | 11.101 |
| IHF | 332-344 | 11.002 |
| MetR | 325-348 | 10.677 |
| PhoB | 369-388 | 10.148 |
| ArgR | 164-179 | 10.048 |
| FadR | 374-390 | 9.945 |
| DcuR | 332-386 | 9.527 |
| NarL | 374-380 | 9.240 |
| Ada | 192-219 | 9.182 |
| GntR | 358-377 | 8.950 |
| RcsB | 172-185 | 8.638 |
| FruR | 291-308 | 8.454 |
| MetJ | 283-290 | 8.225 |
| Rob | 364-384 | 7.803 |
| AraC | 350-367 | 7.654 |
| TyrR | 372-393 | 7.496 |
| DnaA | 297-305 | 7.220 |
| MalT | 358-367 | 7.150 |
| MarA | 76-96 | 7.058 |
| CueR | 94-112 | 6.772 |
| IdnR | 302-317 | 6.645 |
| UxuR | 266-283 | 6.432 |
| GalR | 291-306 | 6.277 |
| GalS | 291-306 | 6.277 |
| LexA | 68-87 | 6.036 |
| PurR | 332-347 | 5.992 |
| TorR | 360-369 | 5.694 |