| TF name | Position | PWM scan score |
| ArcA | 339-399 | 25.535 |
| CytR | 273-312 | 23.588 |
| FNR | 108-129 | 21.293 |
| OmpR | 287-306 | 19.588 |
| Nac | 23-37 | 17.736 |
| ModE | 351-377 | 16.214 |
| Mlc | 204-226 | 16.200 |
| CysB | 204-245 | 16.195 |
| AgaR | 374-397 | 15.534 |
| SoxS | 229-246 | 15.163 |
| ArgR | 282-297 | 14.615 |
| RcsB | 83-96 | 14.242 |
| H-NS | 285-299 | 13.307 |
| GcvA | 105-133 | 13.306 |
| PhoP | 356-372 | 13.077 |
| UlaR | 191-210 | 13.003 |
| MarA | 132-152 | 12.999 |
| PhoB | 277-296 | 12.938 |
| NagC | 134-156 | 12.537 |
| TrpR | 293-310 | 12.490 |
| Lrp | 139-150 | 12.414 |
| IHF | 195-207 | 12.413 |
| DeoR | 180-195 | 12.295 |
| PurR | 127-142 | 12.108 |
| LacI | 132-152 | 12.096 |
| OxyR | 263-307 | 12.095 |
| CpxR | 266-280 | 11.998 |
| Ada | 118-145 | 11.865 |
| Rob | 106-126 | 11.618 |
| CRP | 282-303 | 11.113 |
| TyrR | 216-237 | 10.983 |
| GntR | 343-362 | 10.652 |
| Fis | 24-44 | 10.536 |
| IdnR | 217-232 | 10.392 |
| TorR | 141-150 | 10.329 |
| DcuR | 156-210 | 10.147 |
| AraC | 370-387 | 10.057 |
| NarL | 236-242 | 9.729 |
| NorR | 341-357 | 9.587 |
| XylR | 48-65 | 9.086 |
| GadE | 137-156 | 9.004 |
| Fur | 370-384 | 8.726 |
| FruR | 72-89 | 8.615 |
| ArgP | 148-160 | 8.607 |
| MalT | 89-98 | 8.422 |
| NarP | 224-230 | 8.372 |
| NtrC | 211-227 | 8.315 |
| CueR | 226-244 | 8.236 |
| UxuR | 367-384 | 8.235 |
| PspF | 119-135 | 8.036 |
| MetJ | 189-196 | 7.925 |
| GalR | 127-142 | 7.792 |
| GalS | 127-142 | 7.792 |
| MetR | 368-391 | 7.655 |
| FhlA | 240-279 | 7.326 |
| RhaS | 193-209 | 6.242 |
| MelR | 276-293 | 6.150 |
| FadR | 284-300 | 5.891 |
| DnaA | 266-274 | 5.449 |