| TF name | Position | PWM scan score |
| ArcA | 272-332 | 19.081 |
| UxuR | 1-18 | 17.411 |
| CysB | 2-43 | 17.125 |
| Nac | 78-92 | 16.729 |
| PspF | 73-89 | 15.735 |
| FNR | 161-182 | 15.333 |
| GadE | 162-181 | 14.986 |
| OmpR | 322-341 | 14.817 |
| CytR | 213-252 | 14.741 |
| Fis | 236-256 | 14.446 |
| ModE | 65-91 | 14.401 |
| SoxS | 307-324 | 13.741 |
| DcuR | 66-120 | 13.733 |
| CaiF | 79-123 | 13.684 |
| MarA | 305-325 | 13.600 |
| GcvA | 256-284 | 13.540 |
| NagC | 286-308 | 13.437 |
| OxyR | 270-314 | 13.009 |
| UlaR | 71-90 | 12.872 |
| RcsB | 260-273 | 12.216 |
| MetJ | 122-129 | 11.820 |
| FhlA | 295-334 | 11.689 |
| IHF | 104-116 | 11.477 |
| RhaS | 34-50 | 11.433 |
| Rob | 26-46 | 11.394 |
| H-NS | 173-187 | 11.192 |
| ArgR | 308-323 | 10.983 |
| AgaR | 102-125 | 10.878 |
| TorR | 53-62 | 10.778 |
| NorR | 28-44 | 10.762 |
| CRP | 163-184 | 10.741 |
| MetR | 62-85 | 10.710 |
| PhoP | 229-245 | 10.610 |
| PhoB | 101-120 | 10.533 |
| Fur | 76-90 | 10.325 |
| TyrR | 258-279 | 10.293 |
| NarL | 261-267 | 10.130 |
| Mlc | 267-289 | 9.986 |
| DeoR | 92-107 | 9.542 |
| Ada | 102-129 | 9.242 |
| ArgP | 121-133 | 9.209 |
| XylR | 319-336 | 8.858 |
| Lrp | 79-90 | 8.598 |
| MelR | 109-126 | 8.394 |
| IdnR | 205-220 | 8.008 |
| CpxR | 280-294 | 7.874 |
| GlpR | 165-184 | 7.617 |
| NarP | 8-14 | 7.325 |
| NtrC | 240-256 | 7.131 |
| GalR | 125-140 | 7.072 |
| GalS | 125-140 | 7.072 |
| DnaA | 145-153 | 6.898 |
| AraC | 105-122 | 6.023 |
| LexA | 330-349 | 5.967 |
| CueR | 352-370 | 5.711 |
| MalT | 208-217 | 5.376 |
| GntR | 14-33 | 5.161 |
| LacI | 334-354 | 5.045 |