| TF name | Position | PWM scan score |
| ArcA | 329-389 | 24.354 |
| CytR | 191-230 | 17.870 |
| OxyR | 290-334 | 17.835 |
| CysB | 143-184 | 17.056 |
| Fis | 368-388 | 16.843 |
| FNR | 194-215 | 14.804 |
| MarA | 290-310 | 13.650 |
| TorR | 310-319 | 13.235 |
| PhoB | 365-384 | 12.810 |
| NagC | 194-216 | 12.587 |
| RcsB | 209-222 | 12.574 |
| CRP | 86-107 | 12.541 |
| LexA | 369-388 | 12.360 |
| GntR | 128-147 | 12.354 |
| OmpR | 364-383 | 12.166 |
| PspF | 366-382 | 12.028 |
| IHF | 106-118 | 11.998 |
| Nac | 373-387 | 11.812 |
| Rob | 134-154 | 11.759 |
| GcvA | 190-218 | 11.685 |
| ModE | 95-121 | 11.535 |
| ArgP | 373-385 | 11.464 |
| Lrp | 31-42 | 11.057 |
| TyrR | 25-46 | 10.919 |
| CpxR | 151-165 | 10.473 |
| GlpR | 52-71 | 10.395 |
| H-NS | 211-225 | 10.337 |
| PhoP | 198-214 | 9.888 |
| Mlc | 127-149 | 9.704 |
| FruR | 151-168 | 9.579 |
| DnaA | 61-69 | 9.246 |
| IdnR | 38-53 | 9.143 |
| FadR | 165-181 | 9.051 |
| SoxS | 365-382 | 8.914 |
| Fur | 242-256 | 8.706 |
| PurR | 321-336 | 8.643 |
| GadE | 362-381 | 8.495 |
| DeoR | 311-326 | 8.402 |
| MetJ | 317-324 | 8.379 |
| AraC | 209-226 | 8.304 |
| ArgR | 371-386 | 8.284 |
| UxuR | 181-198 | 8.221 |
| UlaR | 86-105 | 8.089 |
| XylR | 315-332 | 7.870 |
| AgaR | 34-57 | 7.841 |
| NarL | 132-138 | 7.680 |
| LacI | 216-236 | 7.449 |
| RhaS | 284-300 | 6.977 |
| MelR | 76-93 | 6.829 |
| NorR | 27-43 | 6.743 |
| MetR | 182-205 | 6.664 |
| NarP | 233-239 | 6.176 |
| Ada | 230-257 | 5.871 |
| GalS | 321-336 | 5.497 |
| GalR | 321-336 | 5.497 |
| NtrC | 73-89 | 5.154 |