| TF name | Position | PWM scan score |
| ArcA | 247-307 | 23.361 |
| GadE | 185-204 | 18.984 |
| CysB | 101-142 | 18.437 |
| OmpR | 274-293 | 16.881 |
| OxyR | 254-298 | 14.534 |
| H-NS | 287-301 | 14.353 |
| FNR | 273-294 | 14.149 |
| Mlc | 271-293 | 14.099 |
| IHF | 79-91 | 13.821 |
| AgaR | 259-282 | 13.699 |
| CRP | 13-34 | 13.582 |
| ArgP | 288-300 | 13.510 |
| Fis | 282-302 | 13.273 |
| AraC | 79-96 | 12.827 |
| NagC | 274-296 | 12.795 |
| CytR | 278-317 | 12.677 |
| UxuR | 278-295 | 12.526 |
| Lrp | 270-281 | 12.330 |
| Rob | 215-235 | 12.244 |
| Fur | 25-39 | 12.172 |
| Nac | 269-283 | 12.169 |
| RcsB | 268-281 | 12.089 |
| SoxS | 88-105 | 11.654 |
| TyrR | 281-302 | 11.540 |
| GcvA | 9-37 | 11.309 |
| PhoB | 246-265 | 11.083 |
| GlpR | 15-34 | 10.679 |
| MarA | 8-28 | 10.621 |
| ModE | 151-177 | 10.556 |
| UlaR | 260-279 | 10.310 |
| IdnR | 80-95 | 10.204 |
| DnaA | 164-172 | 10.170 |
| PurR | 283-298 | 9.417 |
| GntR | 98-117 | 8.883 |
| XylR | 214-231 | 8.794 |
| FruR | 59-76 | 8.682 |
| CpxR | 204-218 | 8.336 |
| Ada | 80-107 | 8.185 |
| DeoR | 283-298 | 8.176 |
| NarL | 114-120 | 8.154 |
| MalT | 319-328 | 7.932 |
| TorR | 100-109 | 7.891 |
| NorR | 87-103 | 7.710 |
| NarP | 215-221 | 7.423 |
| MetR | 275-298 | 7.384 |
| DcuR | 270-324 | 7.126 |
| PhoP | 20-36 | 7.052 |
| ArgR | 114-129 | 6.957 |
| LacI | 208-228 | 6.583 |
| PspF | 258-274 | 6.411 |
| CueR | 370-388 | 6.161 |
| GalS | 70-85 | 6.154 |
| GalR | 70-85 | 6.154 |
| MelR | 82-99 | 6.017 |
| RhaS | 60-76 | 5.946 |
| NtrC | 215-231 | 5.379 |
| LexA | 367-386 | 5.368 |