| TF name | Position | PWM scan score |
| ArcA | 324-384 | 27.607 |
| CRP | 341-362 | 18.419 |
| H-NS | 339-353 | 18.280 |
| GcvA | 355-383 | 15.382 |
| FNR | 344-365 | 15.180 |
| OmpR | 336-355 | 15.129 |
| CysB | 309-350 | 14.639 |
| Rob | 302-322 | 14.096 |
| DcuR | 332-386 | 13.985 |
| NagC | 340-362 | 13.911 |
| Mlc | 360-382 | 13.890 |
| CytR | 317-356 | 13.498 |
| DeoR | 105-120 | 13.470 |
| Fis | 340-360 | 12.916 |
| PhoP | 262-278 | 12.873 |
| MarA | 249-269 | 12.858 |
| AraC | 370-387 | 12.807 |
| SoxS | 8-25 | 12.769 |
| ArgP | 303-315 | 11.751 |
| PhoB | 349-368 | 11.423 |
| UlaR | 373-392 | 11.115 |
| UxuR | 305-322 | 11.092 |
| GlpR | 339-358 | 10.987 |
| ArgR | 300-315 | 10.915 |
| LexA | 321-340 | 10.757 |
| PspF | 304-320 | 10.618 |
| FruR | 300-317 | 10.598 |
| IHF | 49-61 | 10.499 |
| NtrC | 298-314 | 10.344 |
| GadE | 127-146 | 10.194 |
| RcsB | 302-315 | 10.177 |
| MetR | 39-62 | 10.118 |
| Lrp | 358-369 | 9.840 |
| DnaA | 366-374 | 9.747 |
| LacI | 360-380 | 9.541 |
| GntR | 359-378 | 9.368 |
| MelR | 354-371 | 9.072 |
| XylR | 300-317 | 9.037 |
| TyrR | 196-217 | 8.905 |
| TorR | 307-316 | 8.454 |
| CpxR | 221-235 | 8.430 |
| RhaS | 35-51 | 8.426 |
| OxyR | 273-317 | 8.256 |
| ModE | 353-379 | 8.233 |
| CueR | 25-43 | 8.051 |
| NorR | 343-359 | 7.915 |
| Fur | 15-29 | 7.706 |
| NarL | 16-22 | 7.680 |
| AgaR | 361-384 | 7.267 |
| Nac | 338-352 | 7.241 |
| Ada | 288-315 | 7.107 |
| NarP | 287-293 | 7.056 |
| FadR | 245-261 | 6.815 |
| IdnR | 231-246 | 6.101 |
| MetJ | 99-106 | 5.274 |
| PurR | 358-373 | 5.048 |