| TF name | Position | PWM scan score |
| ArcA | 129-189 | 25.287 |
| CysB | 148-189 | 22.282 |
| OmpR | 142-161 | 20.228 |
| AgaR | 91-114 | 16.905 |
| PhoB | 154-173 | 16.229 |
| Mlc | 69-91 | 15.932 |
| IHF | 159-171 | 14.634 |
| DeoR | 151-166 | 14.524 |
| RcsB | 13-26 | 14.492 |
| FNR | 142-163 | 14.195 |
| UlaR | 94-113 | 13.908 |
| Nac | 167-181 | 13.868 |
| Fis | 148-168 | 13.482 |
| H-NS | 12-26 | 13.303 |
| GadE | 170-189 | 13.030 |
| Fur | 9-23 | 12.085 |
| CytR | 145-184 | 11.604 |
| UxuR | 2-19 | 11.512 |
| Ada | 81-108 | 11.485 |
| CpxR | 28-42 | 11.451 |
| CRP | 145-166 | 11.281 |
| SoxS | 291-308 | 11.034 |
| NagC | 145-167 | 10.987 |
| DnaA | 122-130 | 10.950 |
| ArgP | 155-167 | 10.813 |
| XylR | 152-169 | 10.719 |
| OxyR | 148-192 | 10.711 |
| Lrp | 23-34 | 10.476 |
| TorR | 9-18 | 10.422 |
| GcvA | 153-181 | 10.301 |
| MetR | 11-34 | 10.115 |
| AraC | 124-141 | 10.102 |
| IdnR | 38-53 | 9.942 |
| Rob | 174-194 | 9.912 |
| TyrR | 301-322 | 9.677 |
| ArgR | 155-170 | 9.392 |
| NarL | 17-23 | 9.333 |
| MarA | 379-399 | 9.207 |
| DcuR | 257-311 | 9.029 |
| ModE | 265-291 | 8.933 |
| PspF | 192-208 | 8.731 |
| PurR | 159-174 | 8.677 |
| NarP | 39-45 | 8.306 |
| FhlA | 36-75 | 8.140 |
| GntR | 36-55 | 8.062 |
| MetJ | 282-289 | 8.047 |
| PhoP | 173-189 | 7.847 |
| MelR | 272-289 | 7.659 |
| MalT | 87-96 | 7.129 |
| NorR | 29-45 | 7.079 |
| RhaS | 133-149 | 7.046 |
| GlpR | 147-166 | 6.891 |
| CueR | 166-184 | 6.732 |
| GalS | 251-266 | 5.807 |
| GalR | 251-266 | 5.807 |
| FruR | 36-53 | 5.190 |
| LexA | 100-119 | 5.076 |