| TF name | Position | PWM scan score |
| ArcA | 283-343 | 30.498 |
| Mlc | 173-195 | 18.510 |
| CysB | 269-310 | 18.207 |
| GalR | 257-272 | 18.106 |
| GalS | 257-272 | 18.106 |
| PhoP | 31-47 | 17.958 |
| OmpR | 24-43 | 17.585 |
| NagC | 176-198 | 17.427 |
| Fis | 262-282 | 16.821 |
| GadE | 28-47 | 16.721 |
| OxyR | 123-167 | 15.697 |
| CRP | 26-47 | 15.018 |
| MarA | 260-280 | 14.572 |
| SoxS | 20-37 | 14.340 |
| Nac | 90-104 | 14.246 |
| H-NS | 305-319 | 14.221 |
| PhoB | 340-359 | 14.214 |
| GcvA | 137-165 | 14.053 |
| ArgR | 188-203 | 13.688 |
| FNR | 180-201 | 13.315 |
| IHF | 302-314 | 13.184 |
| UlaR | 169-188 | 13.090 |
| DcuR | 217-271 | 12.864 |
| GntR | 141-160 | 12.825 |
| AgaR | 169-192 | 12.705 |
| ModE | 81-107 | 12.291 |
| ArgP | 367-379 | 12.240 |
| CytR | 159-198 | 12.224 |
| Rob | 116-136 | 11.907 |
| RcsB | 269-282 | 11.586 |
| MetJ | 253-260 | 11.100 |
| DeoR | 30-45 | 10.869 |
| MetR | 267-290 | 10.687 |
| GlpR | 276-295 | 10.631 |
| TyrR | 173-194 | 10.444 |
| CpxR | 304-318 | 10.371 |
| Lrp | 363-374 | 10.335 |
| TorR | 97-106 | 10.329 |
| Ada | 153-180 | 10.243 |
| XylR | 139-156 | 10.212 |
| NorR | 179-195 | 9.765 |
| Fur | 137-151 | 9.684 |
| AraC | 379-396 | 9.362 |
| NarL | 145-151 | 9.333 |
| LacI | 144-164 | 9.158 |
| PspF | 243-259 | 9.087 |
| FruR | 357-374 | 8.538 |
| DnaA | 3-11 | 8.304 |
| IdnR | 19-34 | 7.884 |
| FadR | 314-330 | 7.798 |
| NarP | 125-131 | 7.740 |
| MelR | 374-391 | 7.585 |
| FhlA | 166-205 | 7.201 |
| UxuR | 160-177 | 7.157 |
| NtrC | 152-168 | 6.397 |
| PurR | 257-272 | 6.023 |