| TF name | Position | PWM scan score |
| ArcA | 34-94 | 30.036 |
| CysB | 324-365 | 21.588 |
| FNR | 58-79 | 20.204 |
| GntR | 149-168 | 19.966 |
| OmpR | 54-73 | 19.141 |
| Fis | 58-78 | 17.978 |
| OxyR | 28-72 | 17.917 |
| CpxR | 273-287 | 17.231 |
| UlaR | 222-241 | 16.760 |
| NagC | 54-76 | 16.544 |
| CytR | 52-91 | 16.495 |
| DcuR | 204-258 | 16.382 |
| PhoP | 137-153 | 15.884 |
| CRP | 207-228 | 14.669 |
| H-NS | 67-81 | 14.146 |
| Nac | 56-70 | 14.063 |
| RcsB | 350-363 | 13.938 |
| Fur | 58-72 | 13.627 |
| GlpR | 57-76 | 13.525 |
| MetR | 31-54 | 13.491 |
| IHF | 46-58 | 13.215 |
| PspF | 314-330 | 13.022 |
| PhoB | 130-149 | 12.947 |
| AgaR | 205-228 | 12.655 |
| AraC | 208-225 | 12.645 |
| Lrp | 218-229 | 12.315 |
| ArgR | 381-396 | 12.257 |
| SoxS | 114-131 | 12.153 |
| Rob | 63-83 | 12.008 |
| IdnR | 144-159 | 11.829 |
| Ada | 95-122 | 11.398 |
| GcvA | 134-162 | 10.689 |
| DeoR | 61-76 | 10.653 |
| ArgP | 16-28 | 10.636 |
| LexA | 59-78 | 10.373 |
| DnaA | 56-64 | 10.218 |
| MarA | 158-178 | 10.170 |
| MelR | 178-195 | 9.991 |
| TorR | 57-66 | 9.826 |
| GadE | 20-39 | 9.756 |
| Mlc | 278-300 | 9.517 |
| XylR | 317-334 | 9.336 |
| NarL | 59-65 | 9.129 |
| ModE | 143-169 | 8.690 |
| LacI | 152-172 | 8.426 |
| TyrR | 171-192 | 8.370 |
| FhlA | 101-140 | 8.128 |
| NorR | 209-225 | 7.801 |
| UxuR | 33-50 | 7.342 |
| FadR | 225-241 | 6.560 |
| GalS | 163-178 | 5.944 |
| GalR | 163-178 | 5.944 |
| PurR | 273-288 | 5.862 |
| NarP | 251-257 | 5.835 |
| MetJ | 297-304 | 5.785 |
| FruR | 47-64 | 5.765 |
| MalT | 108-117 | 5.220 |