| TF name | Position | PWM scan score |
| ArcA | 290-350 | 30.036 |
| FNR | 314-335 | 20.204 |
| CysB | 293-334 | 19.372 |
| OmpR | 310-329 | 19.141 |
| Fis | 314-334 | 17.978 |
| OxyR | 284-328 | 17.917 |
| GadE | 172-191 | 17.109 |
| NagC | 310-332 | 16.544 |
| CytR | 308-347 | 16.495 |
| MetR | 237-260 | 16.368 |
| DcuR | 292-346 | 16.349 |
| Fur | 239-253 | 15.408 |
| IdnR | 89-104 | 14.327 |
| H-NS | 323-337 | 14.146 |
| Nac | 312-326 | 14.063 |
| GcvA | 167-195 | 14.015 |
| GlpR | 313-332 | 13.525 |
| IHF | 302-314 | 13.215 |
| CRP | 187-208 | 13.191 |
| Ada | 172-199 | 13.107 |
| GntR | 305-324 | 12.330 |
| PhoP | 318-334 | 12.241 |
| UlaR | 116-135 | 12.184 |
| SoxS | 370-387 | 12.153 |
| PspF | 289-305 | 12.139 |
| Rob | 319-339 | 12.008 |
| RcsB | 173-186 | 11.765 |
| XylR | 168-185 | 11.049 |
| ArgR | 15-30 | 10.823 |
| DeoR | 317-332 | 10.653 |
| ArgP | 272-284 | 10.636 |
| PhoB | 95-114 | 10.582 |
| MarA | 206-226 | 10.553 |
| LexA | 315-334 | 10.373 |
| DnaA | 312-320 | 10.218 |
| NarL | 250-256 | 10.130 |
| Lrp | 94-105 | 10.111 |
| TyrR | 167-188 | 10.052 |
| AgaR | 301-324 | 9.922 |
| TorR | 313-322 | 9.826 |
| AraC | 240-257 | 9.672 |
| CpxR | 35-49 | 9.375 |
| Mlc | 18-40 | 9.300 |
| CueR | 229-247 | 8.820 |
| FadR | 183-199 | 8.152 |
| FhlA | 357-396 | 8.128 |
| UxuR | 61-78 | 7.432 |
| MetJ | 203-210 | 7.313 |
| FruR | 236-253 | 7.221 |
| MalT | 230-239 | 7.061 |
| MelR | 25-42 | 6.870 |
| NtrC | 142-158 | 6.558 |
| ModE | 239-265 | 6.169 |
| RhaS | 62-78 | 5.754 |
| NarP | 203-209 | 5.368 |