| TF name | Position | PWM scan score |
| ArcA | 139-199 | 32.672 |
| OmpR | 307-326 | 20.542 |
| PhoP | 160-176 | 19.236 |
| FNR | 207-228 | 19.011 |
| CysB | 155-196 | 18.925 |
| FhlA | 280-319 | 18.282 |
| GcvA | 155-183 | 18.140 |
| Rob | 74-94 | 18.044 |
| TyrR | 74-95 | 17.991 |
| GadE | 287-306 | 17.387 |
| CytR | 128-167 | 16.721 |
| DcuR | 291-345 | 16.433 |
| Mlc | 207-229 | 15.947 |
| Ada | 11-38 | 15.813 |
| ModE | 274-300 | 14.848 |
| OxyR | 175-219 | 14.659 |
| CRP | 62-83 | 14.585 |
| Fur | 14-28 | 14.537 |
| IHF | 244-256 | 14.438 |
| NagC | 209-231 | 13.615 |
| MarA | 332-352 | 13.537 |
| AgaR | 301-324 | 13.502 |
| Nac | 179-193 | 13.459 |
| GntR | 202-221 | 12.903 |
| UlaR | 213-232 | 12.832 |
| LacI | 224-244 | 12.831 |
| H-NS | 320-334 | 12.756 |
| DeoR | 99-114 | 12.751 |
| NorR | 279-295 | 12.706 |
| CpxR | 306-320 | 12.651 |
| Lrp | 22-33 | 12.248 |
| PspF | 170-186 | 12.139 |
| Fis | 358-378 | 12.127 |
| ArgP | 320-332 | 12.103 |
| DnaA | 209-217 | 11.932 |
| RcsB | 158-171 | 11.909 |
| MelR | 4-21 | 11.857 |
| SoxS | 161-178 | 11.484 |
| ArgR | 364-379 | 11.282 |
| FadR | 69-85 | 11.002 |
| UxuR | 117-134 | 10.545 |
| GlpR | 206-225 | 10.497 |
| XylR | 293-310 | 10.392 |
| NarL | 175-181 | 10.377 |
| PhoB | 298-317 | 10.256 |
| IdnR | 179-194 | 9.838 |
| TrpR | 101-118 | 9.225 |
| TorR | 1-10 | 8.796 |
| MalT | 41-50 | 8.608 |
| LexA | 287-306 | 8.575 |
| AraC | 121-138 | 8.314 |
| MetR | 66-89 | 8.297 |
| NtrC | 20-36 | 8.098 |
| NarP | 264-270 | 7.965 |
| MetJ | 80-87 | 7.327 |
| PurR | 158-173 | 6.115 |
| FruR | 152-169 | 6.094 |
| GalS | 159-174 | 5.529 |
| GalR | 159-174 | 5.529 |