| TF name | Position | PWM scan score |
| ArcA | 318-378 | 41.048 |
| CysB | 301-342 | 27.658 |
| CytR | 355-394 | 25.092 |
| OxyR | 312-356 | 24.652 |
| DcuR | 274-328 | 23.910 |
| OmpR | 364-383 | 22.144 |
| NagC | 359-381 | 22.089 |
| AgaR | 315-338 | 22.032 |
| GcvA | 350-378 | 20.375 |
| MetR | 114-137 | 19.506 |
| H-NS | 368-382 | 18.580 |
| FNR | 356-377 | 18.463 |
| ArgR | 374-389 | 18.235 |
| UlaR | 150-169 | 17.680 |
| Mlc | 159-181 | 16.928 |
| Nac | 44-58 | 16.844 |
| TyrR | 166-187 | 16.719 |
| ModE | 353-379 | 16.543 |
| GadE | 355-374 | 15.225 |
| Rob | 363-383 | 15.200 |
| CRP | 283-304 | 15.065 |
| AraC | 232-249 | 15.048 |
| DnaA | 230-238 | 15.034 |
| PhoB | 202-221 | 14.986 |
| RcsB | 360-373 | 14.783 |
| IHF | 352-364 | 14.614 |
| Fis | 231-251 | 14.228 |
| MarA | 284-304 | 14.063 |
| Ada | 28-55 | 13.809 |
| PhoP | 350-366 | 13.771 |
| IdnR | 36-51 | 13.511 |
| Fur | 151-165 | 13.385 |
| NtrC | 235-251 | 13.244 |
| SoxS | 366-383 | 12.619 |
| Lrp | 362-373 | 12.601 |
| TorR | 359-368 | 12.512 |
| CpxR | 79-93 | 12.110 |
| PspF | 162-178 | 11.941 |
| UxuR | 304-321 | 11.878 |
| NorR | 332-348 | 11.729 |
| GntR | 108-127 | 11.556 |
| FhlA | 63-102 | 11.476 |
| XylR | 150-167 | 11.290 |
| ArgP | 2-14 | 10.920 |
| FruR | 26-43 | 10.816 |
| NarL | 355-361 | 9.444 |
| DeoR | 114-129 | 9.234 |
| GlpR | 362-381 | 8.936 |
| GalR | 25-40 | 7.838 |
| GalS | 25-40 | 7.838 |
| CaiF | 332-376 | 7.327 |
| NarP | 356-362 | 6.591 |
| PurR | 25-40 | 6.529 |
| LacI | 152-172 | 6.432 |
| MetJ | 108-115 | 6.414 |
| RhaS | 232-248 | 6.187 |
| TrpR | 115-132 | 6.076 |
| FadR | 2-18 | 5.817 |
| LexA | 309-328 | 5.590 |