| TF name | Position | PWM scan score |
| ArcA | 276-336 | 38.722 |
| CysB | 275-316 | 29.999 |
| CytR | 119-158 | 29.575 |
| OxyR | 318-362 | 27.537 |
| Mlc | 325-347 | 23.737 |
| NagC | 303-325 | 22.186 |
| OmpR | 148-167 | 20.025 |
| Fur | 341-355 | 19.771 |
| Rob | 104-124 | 19.490 |
| PhoP | 13-29 | 18.842 |
| DcuR | 340-394 | 17.796 |
| GadE | 7-26 | 17.387 |
| ModE | 347-373 | 16.695 |
| H-NS | 316-330 | 16.516 |
| SoxS | 300-317 | 16.415 |
| CRP | 56-77 | 16.178 |
| Nac | 333-347 | 16.157 |
| FNR | 17-38 | 15.952 |
| Fis | 303-323 | 15.838 |
| NorR | 352-368 | 15.661 |
| GntR | 162-181 | 15.561 |
| GcvA | 299-327 | 15.382 |
| IHF | 26-38 | 14.630 |
| PhoB | 185-204 | 14.505 |
| RcsB | 62-75 | 13.700 |
| ArgR | 298-313 | 13.486 |
| MarA | 140-160 | 13.456 |
| PspF | 226-242 | 13.388 |
| ArgP | 324-336 | 13.362 |
| CpxR | 182-196 | 12.816 |
| TyrR | 319-340 | 12.488 |
| AraC | 171-188 | 12.435 |
| UxuR | 121-138 | 12.422 |
| DeoR | 295-310 | 12.376 |
| UlaR | 23-42 | 12.184 |
| MelR | 378-395 | 12.174 |
| Ada | 14-41 | 11.630 |
| MetJ | 77-84 | 11.615 |
| Lrp | 350-361 | 11.502 |
| MetR | 147-170 | 11.230 |
| XylR | 10-27 | 11.139 |
| LacI | 180-200 | 11.099 |
| AgaR | 321-344 | 10.848 |
| GlpR | 58-77 | 10.783 |
| FruR | 285-302 | 9.867 |
| NarL | 55-61 | 9.240 |
| TorR | 11-20 | 8.217 |
| GalR | 191-206 | 8.135 |
| GalS | 191-206 | 8.135 |
| FadR | 15-31 | 8.049 |
| NarP | 20-26 | 7.740 |
| DnaA | 25-33 | 7.510 |
| IdnR | 225-240 | 7.367 |
| NtrC | 85-101 | 5.208 |
| FhlA | 76-115 | 5.031 |