| TF name | Position | PWM scan score |
| ArcA | 276-336 | 28.267 |
| FNR | 320-341 | 21.999 |
| CysB | 308-349 | 19.943 |
| CRP | 317-338 | 18.676 |
| OmpR | 101-120 | 17.601 |
| CytR | 312-351 | 17.559 |
| Fis | 82-102 | 16.724 |
| DcuR | 271-325 | 16.691 |
| Mlc | 318-340 | 15.656 |
| IHF | 329-341 | 15.259 |
| H-NS | 315-329 | 15.161 |
| GcvA | 311-339 | 15.089 |
| AgaR | 101-124 | 15.003 |
| Fur | 114-128 | 14.662 |
| NagC | 320-342 | 14.554 |
| MelR | 326-343 | 14.066 |
| ArgR | 232-247 | 13.606 |
| GlpR | 173-192 | 13.604 |
| RcsB | 22-35 | 13.409 |
| PspF | 280-296 | 13.022 |
| ModE | 321-347 | 12.630 |
| Lrp | 354-365 | 12.449 |
| TyrR | 328-349 | 12.394 |
| OxyR | 317-361 | 12.353 |
| DeoR | 176-191 | 11.879 |
| AraC | 309-326 | 11.776 |
| ArgP | 374-386 | 11.667 |
| LacI | 240-260 | 11.619 |
| UlaR | 324-343 | 11.385 |
| SoxS | 322-339 | 11.354 |
| Nac | 313-327 | 11.324 |
| PurR | 167-182 | 11.234 |
| MarA | 104-124 | 10.733 |
| LexA | 339-358 | 10.681 |
| IdnR | 104-119 | 10.479 |
| FhlA | 247-286 | 10.389 |
| CpxR | 108-122 | 10.294 |
| PhoB | 54-73 | 9.999 |
| DnaA | 285-293 | 9.379 |
| GadE | 281-300 | 9.351 |
| TorR | 280-289 | 9.222 |
| NorR | 314-330 | 9.154 |
| Rob | 321-341 | 8.657 |
| XylR | 136-153 | 8.543 |
| GntR | 169-188 | 8.541 |
| RhaS | 67-83 | 8.285 |
| MetR | 17-40 | 7.968 |
| UxuR | 282-299 | 7.607 |
| PhoP | 355-371 | 7.444 |
| NarL | 356-362 | 6.934 |
| NarP | 357-363 | 6.591 |
| NtrC | 61-77 | 6.579 |
| Ada | 170-197 | 6.103 |
| MetJ | 287-294 | 6.076 |
| MalT | 294-303 | 5.233 |
| TrpR | 209-226 | 5.124 |
| FruR | 190-207 | 5.100 |