| TF name | Position | PWM scan score |
| ArcA | 199-259 | 30.961 |
| NagC | 211-233 | 24.896 |
| CytR | 209-248 | 24.336 |
| CysB | 200-241 | 22.687 |
| OmpR | 227-246 | 20.916 |
| OxyR | 194-238 | 20.443 |
| DcuR | 291-345 | 18.827 |
| TyrR | 236-257 | 17.803 |
| H-NS | 229-243 | 17.060 |
| PhoB | 228-247 | 16.876 |
| FNR | 140-161 | 15.590 |
| CRP | 213-234 | 15.246 |
| UlaR | 272-291 | 15.158 |
| MarA | 370-390 | 14.966 |
| SoxS | 372-389 | 14.828 |
| RcsB | 337-350 | 14.711 |
| ModE | 205-231 | 14.349 |
| Ada | 263-290 | 14.181 |
| Mlc | 214-236 | 14.106 |
| CpxR | 227-241 | 14.053 |
| AgaR | 241-264 | 13.380 |
| AraC | 234-251 | 12.907 |
| GntR | 209-228 | 12.576 |
| GadE | 230-249 | 12.539 |
| IHF | 224-236 | 12.328 |
| Fis | 370-390 | 12.306 |
| DeoR | 373-388 | 12.101 |
| GlpR | 214-233 | 11.966 |
| LacI | 241-261 | 11.723 |
| GcvA | 208-236 | 11.682 |
| Fur | 199-213 | 11.676 |
| XylR | 303-320 | 11.524 |
| Nac | 214-228 | 11.328 |
| MetR | 197-220 | 10.978 |
| Rob | 146-166 | 10.917 |
| DnaA | 290-298 | 10.881 |
| PhoP | 173-189 | 10.831 |
| UxuR | 231-248 | 10.807 |
| IdnR | 233-248 | 10.748 |
| ArgR | 234-249 | 10.531 |
| Lrp | 224-235 | 10.490 |
| MetJ | 337-344 | 10.148 |
| ArgP | 336-348 | 10.092 |
| TorR | 28-37 | 10.028 |
| NarP | 324-330 | 9.455 |
| FruR | 155-172 | 9.404 |
| NarL | 223-229 | 9.240 |
| PspF | 115-131 | 8.281 |
| FadR | 162-178 | 7.900 |
| LexA | 123-142 | 7.734 |
| FhlA | 246-285 | 7.326 |
| MelR | 272-289 | 7.243 |
| PurR | 170-185 | 6.871 |
| MalT | 86-95 | 6.755 |
| TrpR | 379-396 | 6.754 |
| NorR | 276-292 | 6.713 |
| CaiF | 205-249 | 6.632 |
| CueR | 264-282 | 6.339 |