| TF name | Position | PWM scan score |
| ArcA | 145-205 | 33.608 |
| CysB | 153-194 | 25.952 |
| CytR | 149-188 | 24.077 |
| NagC | 169-191 | 21.066 |
| AgaR | 151-174 | 20.998 |
| OmpR | 150-169 | 19.853 |
| DcuR | 77-131 | 18.168 |
| OxyR | 147-191 | 17.975 |
| TyrR | 146-167 | 16.725 |
| GadE | 192-211 | 16.399 |
| CpxR | 158-172 | 16.352 |
| Mlc | 163-185 | 15.757 |
| IHF | 106-118 | 15.688 |
| H-NS | 151-165 | 15.650 |
| Rob | 71-91 | 15.445 |
| CRP | 163-184 | 14.552 |
| ModE | 155-181 | 14.520 |
| Nac | 162-176 | 14.434 |
| FNR | 45-66 | 14.195 |
| GcvA | 52-80 | 13.182 |
| ArgP | 184-196 | 12.694 |
| DnaA | 361-369 | 12.664 |
| RcsB | 59-72 | 12.620 |
| MetR | 101-124 | 12.551 |
| UlaR | 156-175 | 12.548 |
| Fis | 171-191 | 12.377 |
| DeoR | 11-26 | 12.263 |
| ArgR | 176-191 | 12.146 |
| MetJ | 349-356 | 11.889 |
| SoxS | 101-118 | 11.679 |
| AraC | 55-72 | 11.591 |
| Lrp | 163-174 | 11.395 |
| PhoP | 77-93 | 11.352 |
| IdnR | 269-284 | 11.285 |
| Ada | 148-175 | 10.747 |
| MelR | 111-128 | 10.531 |
| GntR | 165-184 | 10.479 |
| PurR | 212-227 | 10.211 |
| GlpR | 163-182 | 9.877 |
| LexA | 259-278 | 9.805 |
| FruR | 229-246 | 9.668 |
| MarA | 187-207 | 9.570 |
| Fur | 111-125 | 9.519 |
| NorR | 12-28 | 9.315 |
| PhoB | 151-170 | 8.996 |
| NarL | 12-18 | 8.928 |
| UxuR | 153-170 | 8.665 |
| XylR | 7-24 | 8.615 |
| NarP | 186-192 | 8.306 |
| TorR | 54-63 | 7.836 |
| PspF | 108-124 | 7.781 |
| LacI | 263-283 | 6.727 |
| MalT | 374-383 | 6.427 |
| GalR | 138-153 | 5.582 |
| GalS | 138-153 | 5.582 |