| TF name | Position | PWM scan score |
| ArcA | 153-213 | 22.571 |
| GcvA | 12-40 | 19.572 |
| FNR | 335-356 | 15.668 |
| PhoB | 17-36 | 15.070 |
| GadE | 281-300 | 15.032 |
| OmpR | 16-35 | 14.608 |
| SoxS | 83-100 | 14.419 |
| MelR | 202-219 | 14.388 |
| DeoR | 198-213 | 14.242 |
| CRP | 1-22 | 13.830 |
| OxyR | 198-242 | 13.772 |
| MarA | 81-101 | 13.481 |
| FhlA | 306-345 | 13.447 |
| TyrR | 10-31 | 13.199 |
| H-NS | 16-30 | 13.107 |
| IHF | 335-347 | 12.670 |
| UlaR | 108-127 | 12.510 |
| RcsB | 59-72 | 12.419 |
| ArgR | 333-348 | 12.335 |
| PhoP | 320-336 | 12.004 |
| ArgP | 154-166 | 11.860 |
| XylR | 93-110 | 11.642 |
| PspF | 96-112 | 11.350 |
| Mlc | 138-160 | 10.693 |
| GntR | 219-238 | 10.357 |
| AraC | 56-73 | 10.252 |
| Fis | 330-350 | 10.179 |
| GlpR | 1-20 | 9.943 |
| UxuR | 180-197 | 9.823 |
| Rob | 147-167 | 9.785 |
| NagC | 142-164 | 9.649 |
| MetR | 280-303 | 9.641 |
| IdnR | 316-331 | 9.492 |
| DcuR | 198-252 | 9.214 |
| CpxR | 270-284 | 9.141 |
| DnaA | 266-274 | 9.041 |
| Ada | 111-138 | 9.034 |
| NorR | 104-120 | 8.593 |
| CytR | 138-177 | 8.589 |
| Lrp | 130-141 | 8.290 |
| NarL | 210-216 | 8.154 |
| Nac | 224-238 | 7.903 |
| NtrC | 131-147 | 7.819 |
| PurR | 12-27 | 7.626 |
| FadR | 200-216 | 7.255 |
| MalT | 216-225 | 7.227 |
| CysB | 129-170 | 7.213 |
| ModE | 341-367 | 6.799 |
| LacI | 140-160 | 6.744 |
| TorR | 55-64 | 6.344 |
| Fur | 335-349 | 5.887 |
| GalS | 237-252 | 5.837 |
| GalR | 237-252 | 5.837 |
| NarP | 282-288 | 5.835 |
| LexA | 283-302 | 5.609 |
| AgaR | 90-113 | 5.224 |