| TF name | Position | PWM scan score |
| ArcA | 329-389 | 25.984 |
| OmpR | 37-56 | 21.498 |
| CysB | 353-394 | 21.416 |
| CytR | 338-377 | 20.606 |
| NagC | 354-376 | 18.038 |
| Fur | 375-389 | 17.737 |
| PhoP | 361-377 | 17.365 |
| CRP | 277-298 | 16.522 |
| GcvA | 368-396 | 16.140 |
| SoxS | 369-386 | 15.951 |
| MetR | 228-251 | 15.433 |
| FNR | 365-386 | 15.215 |
| AraC | 174-191 | 15.067 |
| Fis | 40-60 | 14.628 |
| GntR | 165-184 | 14.446 |
| DcuR | 138-192 | 14.445 |
| Rob | 165-185 | 14.411 |
| OxyR | 13-57 | 13.749 |
| Nac | 276-290 | 13.639 |
| DnaA | 172-180 | 13.593 |
| UxuR | 113-130 | 13.580 |
| PhoB | 38-57 | 13.504 |
| GadE | 358-377 | 13.320 |
| CpxR | 74-88 | 13.314 |
| IHF | 374-386 | 13.165 |
| MarA | 189-209 | 13.089 |
| Mlc | 184-206 | 12.491 |
| AgaR | 366-389 | 12.461 |
| Ada | 167-194 | 12.043 |
| UlaR | 74-93 | 11.824 |
| ArgP | 200-212 | 11.371 |
| H-NS | 359-373 | 11.083 |
| PspF | 144-160 | 10.816 |
| FruR | 352-369 | 10.416 |
| Lrp | 45-56 | 10.180 |
| XylR | 163-180 | 10.038 |
| RcsB | 46-59 | 9.862 |
| TyrR | 362-383 | 9.686 |
| DeoR | 44-59 | 9.628 |
| NarL | 383-389 | 9.580 |
| ArgR | 367-382 | 9.344 |
| LexA | 157-176 | 9.059 |
| IdnR | 180-195 | 8.233 |
| FhlA | 185-224 | 7.981 |
| NorR | 288-304 | 7.898 |
| MelR | 143-160 | 7.719 |
| MetJ | 281-288 | 7.244 |
| ModE | 341-367 | 7.201 |
| GlpR | 88-107 | 7.116 |
| TorR | 70-79 | 7.080 |
| FadR | 84-100 | 6.982 |
| NarP | 95-101 | 5.632 |