| TF name | Position | PWM scan score |
| ArcA | 200-260 | 37.009 |
| OxyR | 195-239 | 24.364 |
| CysB | 288-329 | 21.724 |
| CytR | 199-238 | 21.171 |
| CRP | 317-338 | 18.205 |
| FNR | 320-341 | 18.153 |
| OmpR | 215-234 | 18.130 |
| NagC | 215-237 | 18.004 |
| GadE | 221-240 | 17.300 |
| DcuR | 158-212 | 15.244 |
| RcsB | 210-223 | 15.044 |
| MarA | 210-230 | 14.564 |
| H-NS | 225-239 | 14.538 |
| Rob | 188-208 | 14.304 |
| Fis | 218-238 | 14.281 |
| UxuR | 305-322 | 14.114 |
| TorR | 193-202 | 13.898 |
| GcvA | 259-287 | 13.821 |
| TyrR | 194-215 | 13.750 |
| DeoR | 221-236 | 13.713 |
| FhlA | 208-247 | 13.562 |
| Nac | 214-228 | 13.390 |
| Fur | 206-220 | 13.338 |
| AgaR | 303-326 | 13.037 |
| ArgP | 224-236 | 12.975 |
| Mlc | 318-340 | 12.852 |
| GlpR | 217-236 | 12.786 |
| PhoP | 169-185 | 12.680 |
| IHF | 197-209 | 12.673 |
| PhoB | 208-227 | 12.353 |
| MelR | 163-180 | 11.980 |
| UlaR | 344-363 | 11.153 |
| Lrp | 73-84 | 10.957 |
| IdnR | 218-233 | 10.748 |
| AraC | 341-358 | 10.642 |
| XylR | 309-326 | 10.494 |
| TrpR | 362-379 | 10.487 |
| DnaA | 117-125 | 10.364 |
| ModE | 201-227 | 10.239 |
| LacI | 267-287 | 10.152 |
| FadR | 232-248 | 9.915 |
| FruR | 349-366 | 9.904 |
| PspF | 352-368 | 9.819 |
| MetJ | 10-17 | 9.765 |
| CpxR | 170-184 | 9.460 |
| Ada | 269-296 | 8.796 |
| SoxS | 219-236 | 8.688 |
| MetR | 273-296 | 7.969 |
| GntR | 323-342 | 7.879 |
| NarP | 266-272 | 7.762 |
| NarL | 145-151 | 7.620 |
| MalT | 70-79 | 7.593 |
| ArgR | 164-179 | 7.384 |
| NorR | 211-227 | 6.740 |
| GalS | 321-336 | 6.077 |
| GalR | 321-336 | 6.077 |