| TF name | Position | PWM scan score |
| ArcA | 103-163 | 36.339 |
| CysB | 122-163 | 25.600 |
| OmpR | 115-134 | 21.664 |
| PhoP | 119-135 | 19.810 |
| DcuR | 120-174 | 19.797 |
| Rob | 121-141 | 19.025 |
| CytR | 145-184 | 18.023 |
| PhoB | 115-134 | 17.723 |
| Mlc | 108-130 | 17.353 |
| CRP | 126-147 | 17.252 |
| CpxR | 111-125 | 17.154 |
| FNR | 313-334 | 16.778 |
| DeoR | 111-126 | 16.775 |
| OxyR | 197-241 | 16.683 |
| NagC | 214-236 | 16.505 |
| H-NS | 148-162 | 15.382 |
| AgaR | 116-139 | 15.321 |
| Fis | 218-238 | 14.085 |
| GcvA | 78-106 | 13.502 |
| GadE | 150-169 | 13.351 |
| IHF | 110-122 | 13.173 |
| ModE | 149-175 | 12.680 |
| MarA | 128-148 | 12.592 |
| TorR | 316-325 | 12.278 |
| Fur | 205-219 | 12.183 |
| TyrR | 78-99 | 12.100 |
| RcsB | 299-312 | 12.087 |
| Lrp | 316-327 | 12.059 |
| GntR | 248-267 | 11.867 |
| ArgP | 128-140 | 11.860 |
| UlaR | 238-257 | 11.047 |
| DnaA | 285-293 | 10.881 |
| XylR | 156-173 | 10.835 |
| AraC | 205-222 | 10.786 |
| UxuR | 96-113 | 10.733 |
| Nac | 200-214 | 10.633 |
| GlpR | 120-139 | 10.155 |
| ArgR | 220-235 | 10.129 |
| GalS | 145-160 | 10.091 |
| GalR | 145-160 | 10.091 |
| MetR | 200-223 | 10.014 |
| Ada | 164-191 | 9.894 |
| LacI | 377-397 | 9.705 |
| NorR | 318-334 | 9.681 |
| MetJ | 248-255 | 9.662 |
| SoxS | 27-44 | 9.572 |
| PspF | 116-132 | 9.265 |
| IdnR | 335-350 | 9.220 |
| FadR | 73-89 | 8.761 |
| CaiF | 243-287 | 8.711 |
| NarP | 149-155 | 7.806 |
| MelR | 78-95 | 7.751 |
| NarL | 236-242 | 6.687 |
| MalT | 333-342 | 6.268 |
| FhlA | 186-225 | 6.181 |
| PurR | 276-291 | 5.560 |
| TrpR | 310-327 | 5.452 |
| FruR | 146-163 | 5.190 |