| TF name | Position | PWM scan score |
| ArcA | 248-308 | 35.435 |
| NagC | 289-311 | 21.696 |
| CysB | 258-299 | 21.524 |
| Mlc | 287-309 | 16.620 |
| DcuR | 220-274 | 16.590 |
| GntR | 291-310 | 16.262 |
| Rob | 293-313 | 16.133 |
| ModE | 137-163 | 15.980 |
| AgaR | 367-390 | 15.269 |
| GcvA | 63-91 | 15.158 |
| OmpR | 332-351 | 14.863 |
| GlpR | 327-346 | 14.817 |
| Nac | 135-149 | 14.742 |
| Fis | 325-345 | 14.627 |
| DeoR | 130-145 | 14.348 |
| FNR | 294-315 | 14.316 |
| Fur | 137-151 | 14.282 |
| CRP | 291-312 | 14.274 |
| OxyR | 9-53 | 14.029 |
| MarA | 127-147 | 13.991 |
| H-NS | 374-388 | 13.814 |
| PhoB | 227-246 | 13.592 |
| CytR | 301-340 | 13.111 |
| IHF | 137-149 | 12.658 |
| AraC | 137-154 | 12.557 |
| GadE | 374-393 | 12.421 |
| RhaS | 101-117 | 12.398 |
| ArgP | 138-150 | 12.295 |
| SoxS | 362-379 | 11.955 |
| PurR | 232-247 | 11.498 |
| UxuR | 275-292 | 11.173 |
| UlaR | 255-274 | 11.112 |
| CpxR | 74-88 | 10.989 |
| Lrp | 374-385 | 10.971 |
| RcsB | 134-147 | 10.720 |
| XylR | 292-309 | 10.609 |
| NorR | 295-311 | 10.309 |
| MelR | 281-298 | 10.012 |
| TorR | 136-145 | 9.785 |
| ArgR | 301-316 | 9.444 |
| Ada | 124-151 | 9.266 |
| NarL | 301-307 | 9.240 |
| PhoP | 321-337 | 9.167 |
| TyrR | 284-305 | 9.141 |
| NarP | 9-15 | 8.977 |
| MetR | 294-317 | 8.255 |
| LexA | 29-48 | 8.206 |
| PspF | 323-339 | 8.204 |
| NtrC | 251-267 | 7.794 |
| FadR | 354-370 | 7.100 |
| DnaA | 292-300 | 6.590 |
| IdnR | 280-295 | 6.551 |
| GalR | 122-137 | 5.870 |
| GalS | 122-137 | 5.870 |
| FruR | 279-296 | 5.745 |