| TF name | Position | PWM scan score |
| ArcA | 96-156 | 23.190 |
| PhoP | 169-185 | 17.609 |
| CysB | 106-147 | 16.389 |
| OmpR | 242-261 | 15.217 |
| GadE | 365-384 | 15.088 |
| FNR | 240-261 | 14.207 |
| MelR | 145-162 | 13.994 |
| AgaR | 350-373 | 13.974 |
| Fur | 341-355 | 13.904 |
| IdnR | 354-369 | 13.867 |
| NagC | 243-265 | 13.792 |
| Fis | 171-191 | 13.748 |
| PspF | 91-107 | 13.539 |
| H-NS | 120-134 | 13.425 |
| Rob | 326-346 | 13.143 |
| OxyR | 91-135 | 13.077 |
| ModE | 209-235 | 13.020 |
| CRP | 58-79 | 12.964 |
| UlaR | 86-105 | 12.183 |
| DeoR | 249-264 | 12.157 |
| CytR | 99-138 | 11.940 |
| IHF | 286-298 | 11.784 |
| MarA | 339-359 | 11.641 |
| ArgR | 340-355 | 11.636 |
| Mlc | 348-370 | 11.499 |
| CpxR | 241-255 | 11.093 |
| GlpR | 361-380 | 11.000 |
| AraC | 348-365 | 10.959 |
| PhoB | 379-398 | 10.729 |
| FadR | 68-84 | 10.626 |
| LexA | 138-157 | 10.617 |
| GalR | 24-39 | 10.476 |
| GalS | 24-39 | 10.476 |
| GcvA | 145-173 | 10.476 |
| ArgP | 370-382 | 10.185 |
| RcsB | 92-105 | 10.022 |
| XylR | 93-110 | 9.399 |
| Lrp | 351-362 | 9.290 |
| DcuR | 276-330 | 9.247 |
| TyrR | 286-307 | 8.990 |
| SoxS | 177-194 | 8.794 |
| Ada | 80-107 | 8.742 |
| Nac | 8-22 | 8.455 |
| NarL | 119-125 | 8.131 |
| MetJ | 16-23 | 8.047 |
| TorR | 239-248 | 7.973 |
| UxuR | 348-365 | 7.943 |
| NorR | 97-113 | 7.616 |
| DnaA | 181-189 | 7.526 |
| FruR | 352-369 | 6.936 |
| NtrC | 234-250 | 6.934 |
| CueR | 115-133 | 6.883 |
| NarP | 209-215 | 6.860 |
| GntR | 131-150 | 6.796 |
| MetR | 86-109 | 6.411 |
| RhaS | 295-311 | 5.396 |