| TF name | Position | PWM scan score |
| ArcA | 245-305 | 21.965 |
| OmpR | 211-230 | 17.528 |
| GcvA | 178-206 | 16.319 |
| Fur | 119-133 | 16.300 |
| CysB | 180-221 | 15.501 |
| Rob | 290-310 | 15.305 |
| TyrR | 286-307 | 15.175 |
| AraC | 114-131 | 14.956 |
| MelR | 278-295 | 14.739 |
| GadE | 124-143 | 14.307 |
| Fis | 272-292 | 13.571 |
| PhoB | 270-289 | 12.863 |
| FruR | 9-26 | 12.133 |
| CRP | 289-310 | 11.678 |
| Nac | 150-164 | 11.560 |
| PhoP | 277-293 | 11.535 |
| FNR | 122-143 | 11.494 |
| IdnR | 132-147 | 11.463 |
| RcsB | 284-297 | 11.438 |
| AgaR | 5-28 | 10.749 |
| OxyR | 211-255 | 10.718 |
| Mlc | 264-286 | 10.274 |
| ArgP | 211-223 | 10.242 |
| H-NS | 89-103 | 10.102 |
| ModE | 125-151 | 10.061 |
| GalR | 100-115 | 10.028 |
| GalS | 100-115 | 10.028 |
| MetJ | 155-162 | 9.980 |
| NagC | 212-234 | 9.899 |
| MarA | 50-70 | 9.778 |
| PurR | 345-360 | 9.701 |
| GlpR | 88-107 | 9.439 |
| IHF | 125-137 | 9.433 |
| SoxS | 164-181 | 9.397 |
| TorR | 335-344 | 9.287 |
| DeoR | 337-352 | 9.275 |
| Ada | 269-296 | 9.182 |
| Lrp | 20-31 | 9.108 |
| RhaS | 68-84 | 8.994 |
| UlaR | 380-399 | 8.932 |
| PspF | 86-102 | 8.909 |
| DnaA | 361-369 | 8.866 |
| NarL | 264-270 | 8.728 |
| ArgR | 278-293 | 8.671 |
| DcuR | 105-159 | 8.398 |
| NorR | 115-131 | 8.254 |
| XylR | 172-189 | 8.250 |
| CytR | 281-320 | 8.087 |
| NarP | 122-128 | 7.762 |
| FhlA | 26-65 | 7.458 |
| NtrC | 257-273 | 7.039 |
| CpxR | 182-196 | 6.958 |
| GntR | 117-136 | 6.918 |
| FadR | 193-209 | 6.470 |
| MetR | 40-63 | 6.354 |
| MalT | 109-118 | 5.250 |