| TF name | Position | PWM scan score |
| ArcA | 101-161 | 23.484 |
| CysB | 89-130 | 17.243 |
| GadE | 131-150 | 15.970 |
| CRP | 74-95 | 15.828 |
| FruR | 274-291 | 14.769 |
| CytR | 277-316 | 14.303 |
| PhoB | 73-92 | 14.234 |
| PhoP | 263-279 | 13.497 |
| Mlc | 99-121 | 13.130 |
| MetR | 82-105 | 12.681 |
| ArgP | 365-377 | 12.295 |
| SoxS | 123-140 | 12.266 |
| FNR | 259-280 | 12.208 |
| Nac | 362-376 | 12.005 |
| PspF | 357-373 | 11.971 |
| OmpR | 102-121 | 11.891 |
| UlaR | 103-122 | 11.824 |
| GlpR | 363-382 | 11.822 |
| H-NS | 75-89 | 11.586 |
| GcvA | 252-280 | 10.983 |
| OxyR | 133-177 | 10.947 |
| UxuR | 34-51 | 10.911 |
| MarA | 121-141 | 10.908 |
| Fis | 163-183 | 10.790 |
| Lrp | 361-372 | 10.574 |
| TyrR | 351-372 | 10.556 |
| CpxR | 39-53 | 10.492 |
| IHF | 217-229 | 10.477 |
| NagC | 102-124 | 10.441 |
| GntR | 113-132 | 10.371 |
| ArgR | 78-93 | 10.349 |
| AgaR | 346-369 | 10.215 |
| ModE | 121-147 | 10.203 |
| XylR | 125-142 | 9.668 |
| DeoR | 226-241 | 9.295 |
| CueR | 64-82 | 9.280 |
| AraC | 353-370 | 9.214 |
| RcsB | 311-324 | 9.211 |
| Rob | 253-273 | 9.129 |
| GalR | 273-288 | 8.517 |
| GalS | 273-288 | 8.517 |
| Ada | 90-117 | 8.255 |
| MetJ | 205-212 | 8.201 |
| NorR | 252-268 | 8.076 |
| NarL | 289-295 | 7.907 |
| TorR | 360-369 | 7.898 |
| MalT | 97-106 | 7.593 |
| PurR | 273-288 | 7.328 |
| FadR | 100-116 | 6.989 |
| IdnR | 271-286 | 6.823 |
| LacI | 116-136 | 6.771 |
| RhaS | 11-27 | 6.241 |
| NarP | 45-51 | 6.176 |
| DnaA | 260-268 | 5.831 |
| MelR | 92-109 | 5.631 |
| Fur | 348-362 | 5.337 |