| TF name | Position | PWM scan score |
| ArcA | 256-316 | 27.992 |
| CysB | 277-318 | 23.578 |
| Fur | 277-291 | 23.209 |
| PhoP | 288-304 | 18.448 |
| OmpR | 290-309 | 17.133 |
| FNR | 277-298 | 16.973 |
| AgaR | 86-109 | 16.335 |
| FhlA | 1-40 | 15.946 |
| ArgP | 302-314 | 15.236 |
| Rob | 301-321 | 14.719 |
| MarA | 20-40 | 14.109 |
| NagC | 6-28 | 14.060 |
| Fis | 371-391 | 13.161 |
| GcvA | 300-328 | 13.129 |
| RcsB | 194-207 | 12.758 |
| Lrp | 371-382 | 12.296 |
| PhoB | 4-23 | 12.226 |
| DcuR | 274-328 | 11.984 |
| Nac | 372-386 | 11.900 |
| SoxS | 22-39 | 11.829 |
| FruR | 46-63 | 11.744 |
| OxyR | 268-312 | 11.601 |
| CpxR | 56-70 | 11.451 |
| CytR | 281-320 | 11.421 |
| IHF | 295-307 | 11.414 |
| CRP | 79-100 | 11.228 |
| GadE | 294-313 | 10.886 |
| H-NS | 379-393 | 10.852 |
| ArgR | 373-388 | 10.709 |
| DeoR | 83-98 | 10.474 |
| MalT | 362-371 | 10.289 |
| GntR | 302-321 | 10.255 |
| NarL | 104-110 | 10.130 |
| GlpR | 373-392 | 9.881 |
| TorR | 276-285 | 9.785 |
| TyrR | 298-319 | 9.591 |
| Mlc | 198-220 | 9.492 |
| LacI | 304-324 | 9.477 |
| NarP | 67-73 | 9.455 |
| IdnR | 80-95 | 9.143 |
| RhaS | 103-119 | 8.814 |
| ModE | 366-392 | 8.378 |
| MetJ | 203-210 | 8.365 |
| NorR | 72-88 | 8.345 |
| LexA | 300-319 | 8.316 |
| PspF | 187-203 | 8.184 |
| UxuR | 246-263 | 8.161 |
| DnaA | 248-256 | 8.112 |
| AraC | 94-111 | 7.732 |
| MetR | 247-270 | 7.600 |
| UlaR | 42-61 | 7.462 |
| XylR | 212-229 | 6.936 |
| MelR | 230-247 | 6.837 |
| NtrC | 11-27 | 5.958 |
| CueR | 238-256 | 5.711 |
| GalR | 300-315 | 5.489 |
| GalS | 300-315 | 5.489 |