| TF name | Position | PWM scan score |
| ArcA | 267-327 | 30.231 |
| GcvA | 295-323 | 19.486 |
| OmpR | 299-318 | 18.189 |
| Rob | 298-318 | 18.002 |
| RcsB | 170-183 | 17.604 |
| FNR | 298-319 | 17.358 |
| OxyR | 272-316 | 16.734 |
| CysB | 286-327 | 16.585 |
| CRP | 295-316 | 16.356 |
| CytR | 161-200 | 16.244 |
| FhlA | 307-346 | 15.998 |
| TyrR | 354-375 | 15.660 |
| GadE | 366-385 | 15.057 |
| FruR | 192-209 | 14.144 |
| H-NS | 300-314 | 13.633 |
| DnaA | 185-193 | 13.593 |
| XylR | 297-314 | 13.538 |
| AgaR | 288-311 | 13.438 |
| IHF | 353-365 | 13.249 |
| GlpR | 297-316 | 13.002 |
| Lrp | 194-205 | 12.641 |
| NagC | 360-382 | 12.384 |
| Fis | 175-195 | 12.369 |
| DeoR | 84-99 | 12.164 |
| Mlc | 182-204 | 11.775 |
| Nac | 299-313 | 11.588 |
| SoxS | 348-365 | 11.415 |
| LexA | 219-238 | 11.335 |
| PhoB | 291-310 | 10.789 |
| DcuR | 295-349 | 10.708 |
| TorR | 41-50 | 10.095 |
| ModE | 347-373 | 9.994 |
| MetR | 299-322 | 9.806 |
| AraC | 160-177 | 9.574 |
| CpxR | 306-320 | 9.323 |
| UlaR | 304-323 | 9.248 |
| Ada | 323-350 | 9.044 |
| NorR | 344-360 | 9.043 |
| UxuR | 350-367 | 9.034 |
| ArgR | 162-177 | 8.773 |
| MarA | 79-99 | 8.699 |
| GalS | 297-312 | 8.242 |
| GalR | 297-312 | 8.242 |
| GntR | 14-33 | 8.205 |
| PhoP | 185-201 | 7.936 |
| CueR | 214-232 | 7.739 |
| MetJ | 329-336 | 7.485 |
| PurR | 297-312 | 7.474 |
| ArgP | 365-377 | 7.351 |
| IdnR | 317-332 | 7.340 |
| Fur | 325-339 | 6.598 |
| MelR | 316-333 | 6.526 |
| NarL | 61-67 | 6.218 |
| MalT | 199-208 | 5.789 |
| NarP | 152-158 | 5.659 |
| PspF | 276-292 | 5.340 |
| FadR | 229-245 | 5.311 |
| LacI | 170-190 | 5.129 |