| TF name | Position | PWM scan score |
| ArcA | 16-76 | 27.562 |
| UxuR | 43-60 | 22.323 |
| Mlc | 58-80 | 21.048 |
| CysB | 245-286 | 17.285 |
| Fur | 235-249 | 17.048 |
| FNR | 128-149 | 15.999 |
| H-NS | 132-146 | 15.881 |
| CytR | 110-149 | 15.827 |
| OmpR | 133-152 | 15.600 |
| IHF | 128-140 | 15.194 |
| OxyR | 110-154 | 14.929 |
| Rob | 41-61 | 13.952 |
| ArgP | 243-255 | 13.426 |
| Fis | 133-153 | 13.162 |
| CRP | 44-65 | 13.157 |
| TyrR | 116-137 | 12.812 |
| GadE | 133-152 | 12.299 |
| NagC | 127-149 | 11.305 |
| SoxS | 144-161 | 11.298 |
| PhoP | 180-196 | 11.038 |
| CpxR | 230-244 | 10.946 |
| PhoB | 52-71 | 10.638 |
| MarA | 233-253 | 10.378 |
| Nac | 54-68 | 10.301 |
| Lrp | 140-151 | 10.089 |
| DeoR | 68-83 | 9.968 |
| GcvA | 316-344 | 9.797 |
| DcuR | 149-203 | 9.583 |
| GntR | 59-78 | 9.558 |
| ArgR | 1-16 | 9.500 |
| DnaA | 45-53 | 9.464 |
| UlaR | 241-260 | 9.437 |
| IdnR | 36-51 | 9.331 |
| RcsB | 54-67 | 9.257 |
| AgaR | 54-77 | 9.225 |
| CueR | 126-144 | 9.203 |
| TorR | 186-195 | 9.041 |
| NarL | 237-243 | 8.685 |
| GlpR | 15-34 | 8.637 |
| XylR | 117-134 | 8.397 |
| NtrC | 349-365 | 8.253 |
| PspF | 343-359 | 8.053 |
| LacI | 44-64 | 7.889 |
| MetR | 209-232 | 7.849 |
| MetJ | 110-117 | 7.798 |
| AraC | 200-217 | 7.785 |
| Ada | 190-217 | 7.557 |
| NarP | 16-22 | 7.423 |
| GalR | 39-54 | 7.202 |
| GalS | 39-54 | 7.202 |
| ModE | 50-76 | 6.907 |
| MalT | 293-302 | 6.517 |
| MelR | 144-161 | 5.951 |
| FadR | 327-343 | 5.922 |
| PurR | 369-384 | 5.796 |
| RhaS | 292-308 | 5.653 |
| NorR | 122-138 | 5.568 |
| LexA | 253-272 | 5.420 |