| TF name | Position | PWM scan score |
| ArcA | 249-309 | 29.477 |
| OxyR | 182-226 | 21.026 |
| OmpR | 203-222 | 20.825 |
| NagC | 203-225 | 20.384 |
| CytR | 186-225 | 18.006 |
| CysB | 278-319 | 17.493 |
| PspF | 137-153 | 17.491 |
| AgaR | 197-220 | 17.372 |
| CRP | 137-158 | 17.312 |
| IHF | 269-281 | 17.022 |
| FNR | 207-228 | 16.867 |
| Ada | 188-215 | 15.867 |
| DcuR | 328-382 | 15.637 |
| DeoR | 209-224 | 15.202 |
| UlaR | 195-214 | 15.009 |
| H-NS | 138-152 | 14.529 |
| Fis | 17-37 | 14.173 |
| ModE | 19-45 | 13.428 |
| Rob | 143-163 | 13.362 |
| AraC | 269-286 | 13.021 |
| Mlc | 238-260 | 12.556 |
| TyrR | 337-358 | 12.393 |
| PhoP | 343-359 | 11.975 |
| GlpR | 315-334 | 11.973 |
| GcvA | 131-159 | 11.587 |
| RcsB | 345-358 | 11.543 |
| MarA | 188-208 | 11.508 |
| LexA | 163-182 | 11.285 |
| ArgP | 268-280 | 10.920 |
| ArgR | 213-228 | 10.856 |
| DnaA | 26-34 | 10.846 |
| Lrp | 272-283 | 10.837 |
| GadE | 204-223 | 10.816 |
| Fur | 140-154 | 10.640 |
| XylR | 311-328 | 10.285 |
| Nac | 291-305 | 10.272 |
| PhoB | 136-155 | 10.092 |
| MetR | 327-350 | 10.089 |
| UxuR | 265-282 | 9.840 |
| NorR | 297-313 | 9.765 |
| CpxR | 203-217 | 9.645 |
| GntR | 222-241 | 9.557 |
| NarL | 238-244 | 9.444 |
| MelR | 129-146 | 8.547 |
| SoxS | 73-90 | 8.300 |
| MalT | 332-341 | 8.062 |
| GalS | 163-178 | 7.547 |
| GalR | 163-178 | 7.547 |
| IdnR | 73-88 | 7.528 |
| NarP | 97-103 | 7.144 |
| TrpR | 306-323 | 7.098 |
| MetJ | 349-356 | 7.044 |
| TorR | 23-32 | 7.027 |
| FruR | 218-235 | 6.443 |
| RhaS | 87-103 | 6.418 |
| LacI | 274-294 | 5.485 |
| FadR | 313-329 | 5.151 |