| TF name | Position | PWM scan score |
| ArcA | 36-96 | 34.570 |
| CytR | 146-185 | 22.074 |
| NagC | 106-128 | 20.916 |
| OxyR | 85-129 | 20.233 |
| UlaR | 167-186 | 19.649 |
| CysB | 101-142 | 19.586 |
| Fis | 56-76 | 18.399 |
| OmpR | 138-157 | 17.528 |
| CaiF | 49-93 | 17.442 |
| DcuR | 40-94 | 17.212 |
| AgaR | 89-112 | 16.458 |
| IHF | 26-38 | 16.204 |
| GcvA | 81-109 | 16.049 |
| Rob | 248-268 | 15.790 |
| FNR | 177-198 | 15.296 |
| UxuR | 19-36 | 15.205 |
| H-NS | 152-166 | 15.002 |
| RcsB | 249-262 | 14.763 |
| AraC | 132-149 | 14.626 |
| CRP | 150-171 | 14.223 |
| SoxS | 61-78 | 14.154 |
| MarA | 141-161 | 14.151 |
| PhoB | 82-101 | 13.887 |
| ArgP | 253-265 | 13.809 |
| Nac | 250-264 | 13.659 |
| XylR | 247-264 | 13.622 |
| Mlc | 365-387 | 13.481 |
| Ada | 87-114 | 13.248 |
| TorR | 245-254 | 13.235 |
| GadE | 164-183 | 13.032 |
| TyrR | 303-324 | 13.002 |
| ArgR | 82-97 | 12.660 |
| FhlA | 266-305 | 12.640 |
| PhoP | 247-263 | 12.578 |
| ModE | 237-263 | 12.287 |
| GlpR | 341-360 | 11.760 |
| Lrp | 303-314 | 11.497 |
| Fur | 171-185 | 11.399 |
| MetR | 271-294 | 11.228 |
| CpxR | 35-49 | 10.448 |
| DeoR | 294-309 | 10.023 |
| GntR | 156-175 | 9.782 |
| FadR | 2-18 | 9.533 |
| DnaA | 25-33 | 9.331 |
| MelR | 40-57 | 9.046 |
| NarL | 118-124 | 8.993 |
| LexA | 183-202 | 8.390 |
| MetJ | 369-376 | 8.047 |
| IdnR | 243-258 | 7.716 |
| NorR | 244-260 | 7.710 |
| FruR | 23-40 | 7.510 |
| GalR | 352-367 | 7.359 |
| GalS | 352-367 | 7.359 |
| MalT | 237-246 | 6.056 |
| PspF | 81-97 | 5.874 |
| LacI | 343-363 | 5.740 |
| NarP | 53-59 | 5.708 |
| CueR | 48-66 | 5.362 |
| NtrC | 38-54 | 5.009 |