| TF name | Position | PWM scan score |
| ArcA | 52-112 | 25.653 |
| OmpR | 38-57 | 16.848 |
| NagC | 42-64 | 16.419 |
| FNR | 36-57 | 16.100 |
| ArgR | 249-264 | 15.388 |
| Fis | 348-368 | 15.355 |
| CRP | 66-87 | 14.896 |
| DcuR | 20-74 | 14.855 |
| AgaR | 123-146 | 14.669 |
| CysB | 49-90 | 14.602 |
| CpxR | 326-340 | 14.442 |
| MetR | 345-368 | 13.769 |
| Ada | 18-45 | 13.624 |
| GcvA | 94-122 | 13.419 |
| H-NS | 372-386 | 12.813 |
| MarA | 97-117 | 12.797 |
| SoxS | 345-362 | 12.775 |
| GlpR | 74-93 | 12.684 |
| Mlc | 331-353 | 12.519 |
| GntR | 4-23 | 12.477 |
| Rob | 326-346 | 12.304 |
| PhoB | 150-169 | 12.055 |
| GadE | 78-97 | 11.977 |
| PspF | 239-255 | 11.971 |
| PhoP | 120-136 | 11.970 |
| DeoR | 78-93 | 11.828 |
| FhlA | 3-42 | 11.764 |
| Lrp | 369-380 | 11.116 |
| IHF | 52-64 | 10.942 |
| ModE | 6-32 | 10.924 |
| UxuR | 286-303 | 10.558 |
| RcsB | 35-48 | 10.493 |
| TorR | 320-329 | 10.416 |
| OxyR | 17-61 | 9.997 |
| MelR | 28-45 | 9.988 |
| CytR | 355-394 | 9.981 |
| AraC | 61-78 | 9.130 |
| TyrR | 13-34 | 8.976 |
| NarL | 55-61 | 8.951 |
| DnaA | 349-357 | 8.680 |
| Nac | 372-386 | 8.326 |
| CueR | 236-254 | 8.098 |
| XylR | 12-29 | 8.033 |
| IdnR | 41-56 | 7.810 |
| LacI | 218-238 | 7.553 |
| UlaR | 26-45 | 7.517 |
| GalS | 213-228 | 7.483 |
| GalR | 213-228 | 7.483 |
| MetJ | 52-59 | 7.270 |
| ArgP | 108-120 | 7.052 |
| FadR | 324-340 | 6.887 |
| LexA | 105-124 | 6.724 |
| Fur | 51-65 | 6.694 |
| NorR | 62-78 | 6.535 |
| MalT | 198-207 | 6.373 |
| PurR | 384-399 | 6.367 |
| FruR | 153-170 | 6.153 |
| NarP | 318-324 | 5.835 |
| RhaS | 246-262 | 5.141 |