| TF name | Position | PWM scan score |
| ArcA | 321-381 | 33.953 |
| DcuR | 302-356 | 26.388 |
| OxyR | 325-369 | 23.107 |
| CysB | 337-378 | 17.882 |
| CytR | 241-280 | 17.272 |
| OmpR | 240-259 | 16.961 |
| CaiF | 321-365 | 16.747 |
| Nac | 320-334 | 16.702 |
| FNR | 318-339 | 16.555 |
| NagC | 230-252 | 16.439 |
| GadE | 327-346 | 16.122 |
| PhoB | 266-285 | 15.945 |
| Ada | 273-300 | 15.689 |
| AgaR | 314-337 | 15.322 |
| Mlc | 324-346 | 14.945 |
| H-NS | 245-259 | 14.819 |
| IdnR | 330-345 | 14.317 |
| Rob | 129-149 | 14.257 |
| CRP | 229-250 | 14.242 |
| Fis | 221-241 | 14.233 |
| TyrR | 249-270 | 13.876 |
| GcvA | 240-268 | 13.427 |
| IHF | 154-166 | 12.720 |
| ModE | 132-158 | 12.513 |
| MarA | 116-136 | 12.166 |
| UxuR | 44-61 | 11.888 |
| RcsB | 283-296 | 11.639 |
| Lrp | 321-332 | 11.615 |
| Fur | 324-338 | 11.255 |
| DeoR | 350-365 | 10.933 |
| CpxR | 350-364 | 10.865 |
| ArgP | 323-335 | 10.665 |
| FadR | 127-143 | 10.635 |
| PspF | 55-71 | 10.524 |
| MetR | 344-367 | 10.321 |
| NorR | 233-249 | 10.309 |
| MelR | 102-119 | 10.250 |
| SoxS | 355-372 | 9.835 |
| PhoP | 357-373 | 9.823 |
| XylR | 323-340 | 9.723 |
| TorR | 194-203 | 9.719 |
| NarL | 326-332 | 9.580 |
| ArgR | 269-284 | 9.478 |
| GlpR | 330-349 | 9.470 |
| DnaA | 230-238 | 9.464 |
| MetJ | 197-204 | 9.382 |
| NtrC | 361-377 | 8.931 |
| NarP | 52-58 | 8.660 |
| RhaS | 340-356 | 8.384 |
| UlaR | 336-355 | 7.945 |
| LexA | 319-338 | 7.825 |
| FruR | 334-351 | 7.674 |
| AraC | 280-297 | 7.636 |
| GntR | 229-248 | 7.344 |
| FhlA | 351-390 | 6.215 |
| PurR | 187-202 | 6.033 |
| LacI | 45-65 | 5.438 |
| GalS | 350-365 | 5.119 |
| GalR | 350-365 | 5.119 |