| TF name | Position | PWM scan score |
| ArcA | 293-353 | 33.294 |
| FNR | 223-244 | 21.109 |
| CytR | 276-315 | 20.788 |
| AgaR | 309-332 | 20.431 |
| CysB | 280-321 | 20.278 |
| NagC | 330-352 | 19.473 |
| OxyR | 298-342 | 16.678 |
| H-NS | 343-357 | 16.500 |
| GadE | 232-251 | 16.029 |
| DeoR | 83-98 | 15.425 |
| Mlc | 362-384 | 15.130 |
| OmpR | 326-345 | 14.983 |
| DcuR | 261-315 | 14.489 |
| CpxR | 107-121 | 14.457 |
| Fis | 237-257 | 14.440 |
| Nac | 255-269 | 14.273 |
| IHF | 301-313 | 13.865 |
| CRP | 220-241 | 13.796 |
| PhoB | 307-326 | 13.662 |
| TyrR | 289-310 | 13.306 |
| ArgR | 376-391 | 12.875 |
| UxuR | 16-33 | 12.435 |
| UlaR | 317-336 | 12.357 |
| Ada | 304-331 | 12.110 |
| Lrp | 316-327 | 11.938 |
| GlpR | 237-256 | 11.694 |
| AraC | 7-24 | 11.305 |
| MelR | 95-112 | 11.286 |
| RcsB | 275-288 | 11.270 |
| MetR | 346-369 | 10.918 |
| GcvA | 288-316 | 10.744 |
| XylR | 127-144 | 10.704 |
| PhoP | 230-246 | 10.568 |
| PurR | 75-90 | 10.008 |
| DnaA | 107-115 | 9.958 |
| Rob | 302-322 | 9.902 |
| SoxS | 185-202 | 9.832 |
| FhlA | 327-366 | 9.717 |
| TorR | 305-314 | 9.476 |
| ArgP | 279-291 | 9.302 |
| FruR | 125-142 | 9.061 |
| GalS | 75-90 | 8.866 |
| GalR | 75-90 | 8.866 |
| ModE | 311-337 | 8.722 |
| MarA | 373-393 | 8.644 |
| PspF | 233-249 | 8.570 |
| Fur | 300-314 | 8.334 |
| NorR | 304-320 | 8.271 |
| GntR | 303-322 | 8.266 |
| IdnR | 190-205 | 8.223 |
| MetJ | 223-230 | 8.047 |
| LacI | 346-366 | 7.654 |
| NarL | 148-154 | 7.502 |
| NarP | 109-115 | 7.400 |
| NtrC | 9-25 | 6.124 |
| FadR | 243-259 | 5.757 |
| LexA | 314-333 | 5.257 |