| TF name | Position | PWM scan score |
| ArcA | 117-177 | 19.191 |
| OxyR | 125-169 | 18.173 |
| FNR | 289-310 | 16.236 |
| Ada | 111-138 | 15.608 |
| Nac | 20-34 | 15.480 |
| DnaA | 69-77 | 15.034 |
| UlaR | 120-139 | 14.953 |
| CysB | 124-165 | 14.729 |
| OmpR | 114-133 | 13.766 |
| TyrR | 126-147 | 13.613 |
| MarA | 168-188 | 13.305 |
| CRP | 286-307 | 13.182 |
| Fis | 295-315 | 12.826 |
| TorR | 252-261 | 12.714 |
| CytR | 127-166 | 12.329 |
| RcsB | 124-137 | 11.966 |
| NagC | 114-136 | 11.922 |
| PspF | 223-239 | 11.783 |
| RhaS | 335-351 | 11.451 |
| NorR | 129-145 | 11.370 |
| Rob | 175-195 | 11.048 |
| MelR | 139-156 | 11.009 |
| H-NS | 378-392 | 10.983 |
| IHF | 295-307 | 10.874 |
| GcvA | 124-152 | 10.580 |
| NtrC | 110-126 | 10.517 |
| ArgR | 382-397 | 10.493 |
| SoxS | 308-325 | 10.439 |
| AraC | 124-141 | 10.364 |
| Lrp | 126-137 | 10.128 |
| MetR | 173-196 | 9.926 |
| ArgP | 353-365 | 9.643 |
| PhoB | 370-389 | 9.509 |
| PhoP | 300-316 | 9.389 |
| Fur | 295-309 | 9.370 |
| NarL | 393-399 | 9.333 |
| GntR | 152-171 | 9.078 |
| GadE | 379-398 | 8.974 |
| MetJ | 161-168 | 8.962 |
| XylR | 126-143 | 8.878 |
| GalS | 165-180 | 8.694 |
| GalR | 165-180 | 8.694 |
| UxuR | 381-398 | 8.329 |
| ModE | 160-186 | 8.176 |
| CpxR | 4-18 | 7.868 |
| NarP | 223-229 | 7.762 |
| FhlA | 219-258 | 7.726 |
| DeoR | 97-112 | 7.349 |
| IdnR | 3-18 | 7.011 |
| LacI | 336-356 | 6.012 |
| PurR | 85-100 | 5.985 |
| AgaR | 110-133 | 5.517 |
| GlpR | 304-323 | 5.516 |
| TrpR | 279-296 | 5.308 |