| TF name | Position | PWM scan score |
| ArcA | 257-317 | 30.337 |
| CysB | 348-389 | 26.227 |
| DcuR | 79-133 | 24.269 |
| CytR | 239-278 | 21.616 |
| OxyR | 48-92 | 21.205 |
| RcsB | 120-133 | 18.122 |
| OmpR | 109-128 | 17.765 |
| AgaR | 281-304 | 17.762 |
| NagC | 273-295 | 17.487 |
| Rob | 182-202 | 17.393 |
| FNR | 274-295 | 15.789 |
| H-NS | 277-291 | 15.554 |
| GcvA | 339-367 | 15.349 |
| ArgP | 370-382 | 15.236 |
| Fis | 368-388 | 14.875 |
| CRP | 359-380 | 14.100 |
| UlaR | 224-243 | 13.645 |
| PhoP | 373-389 | 13.514 |
| MetR | 264-287 | 13.367 |
| IHF | 269-281 | 12.919 |
| Fur | 348-362 | 12.852 |
| Mlc | 204-226 | 12.687 |
| SoxS | 338-355 | 12.655 |
| Nac | 367-381 | 12.533 |
| GadE | 377-396 | 12.392 |
| DeoR | 100-115 | 12.310 |
| MarA | 338-358 | 12.139 |
| Ada | 221-248 | 11.640 |
| XylR | 364-381 | 11.628 |
| PhoB | 264-283 | 11.548 |
| GalS | 181-196 | 11.348 |
| GalR | 181-196 | 11.348 |
| TyrR | 203-224 | 11.077 |
| Lrp | 371-382 | 11.021 |
| ModE | 212-238 | 11.007 |
| LexA | 133-152 | 11.001 |
| GlpR | 44-63 | 10.890 |
| PurR | 339-354 | 10.859 |
| UxuR | 113-130 | 10.723 |
| CpxR | 276-290 | 10.642 |
| MelR | 79-96 | 10.508 |
| DnaA | 328-336 | 10.189 |
| ArgR | 371-386 | 9.914 |
| PspF | 220-236 | 9.631 |
| NarL | 349-355 | 9.580 |
| AraC | 351-368 | 9.259 |
| FadR | 264-280 | 9.032 |
| NorR | 184-200 | 8.254 |
| FhlA | 92-131 | 8.186 |
| LacI | 355-375 | 7.973 |
| TorR | 371-380 | 7.771 |
| NarP | 354-360 | 7.740 |
| IdnR | 264-279 | 7.723 |
| GntR | 15-34 | 7.715 |
| RhaS | 106-122 | 6.435 |
| FruR | 230-247 | 5.675 |
| MalT | 89-98 | 5.377 |
| MetJ | 171-178 | 5.047 |