| TF name | Position | PWM scan score |
| ArcA | 233-293 | 21.740 |
| MetR | 138-161 | 15.270 |
| Rob | 135-155 | 14.611 |
| OxyR | 233-277 | 14.554 |
| CysB | 276-317 | 14.062 |
| GlpR | 72-91 | 13.852 |
| AraC | 143-160 | 13.776 |
| MarA | 287-307 | 13.722 |
| OmpR | 359-378 | 13.679 |
| FNR | 119-140 | 13.232 |
| PhoP | 103-119 | 12.563 |
| Fis | 260-280 | 12.081 |
| CRP | 116-137 | 11.923 |
| IHF | 48-60 | 11.844 |
| ArgR | 266-281 | 11.642 |
| ModE | 41-67 | 11.270 |
| GalR | 255-270 | 11.197 |
| GalS | 255-270 | 11.197 |
| DeoR | 221-236 | 10.881 |
| TyrR | 286-307 | 10.787 |
| GadE | 139-158 | 10.062 |
| ArgP | 235-247 | 10.037 |
| Nac | 80-94 | 9.914 |
| PhoB | 138-157 | 9.810 |
| Mlc | 373-395 | 9.677 |
| SoxS | 374-391 | 9.672 |
| H-NS | 268-282 | 9.432 |
| UlaR | 188-207 | 9.257 |
| RhaS | 82-98 | 9.243 |
| CpxR | 105-119 | 9.199 |
| AgaR | 130-153 | 9.141 |
| GcvA | 310-338 | 9.086 |
| XylR | 357-374 | 9.017 |
| NarL | 173-179 | 8.951 |
| PspF | 220-236 | 8.919 |
| Fur | 283-297 | 8.557 |
| Lrp | 286-297 | 8.535 |
| RcsB | 287-300 | 8.246 |
| DnaA | 366-374 | 8.131 |
| PurR | 284-299 | 8.098 |
| CytR | 302-341 | 7.996 |
| UxuR | 221-238 | 7.775 |
| NagC | 41-63 | 7.686 |
| GntR | 191-210 | 7.652 |
| MalT | 344-353 | 7.564 |
| NarP | 178-184 | 7.325 |
| FadR | 86-102 | 7.074 |
| DcuR | 279-333 | 6.763 |
| TorR | 262-271 | 6.598 |
| LexA | 261-280 | 6.212 |
| MetJ | 152-159 | 5.889 |
| Ada | 95-122 | 5.509 |
| MelR | 6-23 | 5.458 |
| NorR | 249-265 | 5.024 |