| TF name | Position | PWM scan score |
| ArcA | 160-220 | 22.476 |
| ModE | 197-223 | 20.405 |
| OxyR | 161-205 | 20.091 |
| Ada | 76-103 | 17.643 |
| CysB | 264-305 | 17.561 |
| CytR | 205-244 | 16.956 |
| FNR | 44-65 | 16.832 |
| MarA | 252-272 | 14.969 |
| GadE | 46-65 | 14.869 |
| IHF | 53-65 | 14.019 |
| SoxS | 64-81 | 13.926 |
| NagC | 187-209 | 13.733 |
| UlaR | 47-66 | 13.695 |
| Rob | 196-216 | 13.572 |
| H-NS | 288-302 | 13.286 |
| DcuR | 162-216 | 13.119 |
| NorR | 43-59 | 13.089 |
| OmpR | 255-274 | 12.992 |
| PhoP | 156-172 | 12.961 |
| GntR | 89-108 | 12.906 |
| CRP | 61-82 | 12.465 |
| GcvA | 38-66 | 12.313 |
| TyrR | 102-123 | 12.292 |
| DeoR | 264-279 | 12.273 |
| ArgR | 126-141 | 11.396 |
| Nac | 107-121 | 11.084 |
| GlpR | 293-312 | 11.012 |
| Fis | 188-208 | 10.875 |
| AgaR | 32-55 | 10.789 |
| UxuR | 277-294 | 10.706 |
| Fur | 38-52 | 10.705 |
| XylR | 40-57 | 10.485 |
| PhoB | 290-309 | 10.258 |
| MelR | 175-192 | 9.985 |
| ArgP | 276-288 | 9.519 |
| CpxR | 245-259 | 9.487 |
| TorR | 190-199 | 9.465 |
| NarL | 295-301 | 9.129 |
| GalR | 93-108 | 8.830 |
| GalS | 93-108 | 8.830 |
| IdnR | 91-106 | 8.767 |
| Lrp | 264-275 | 8.747 |
| PspF | 277-293 | 8.476 |
| FhlA | 44-83 | 7.619 |
| MalT | 386-395 | 7.615 |
| AraC | 236-253 | 7.596 |
| NarP | 162-168 | 7.423 |
| RcsB | 115-128 | 7.285 |
| Mlc | 185-207 | 6.833 |
| DnaA | 242-250 | 6.778 |
| MetR | 29-52 | 6.504 |
| FadR | 173-189 | 6.448 |
| MetJ | 195-202 | 6.145 |
| LacI | 92-112 | 5.851 |
| NtrC | 124-140 | 5.260 |
| RhaS | 294-310 | 5.234 |