| TF name | Position | PWM scan score |
| ArcA | 10-70 | 22.946 |
| FNR | 304-325 | 18.022 |
| OmpR | 312-331 | 17.223 |
| PspF | 323-339 | 16.517 |
| CysB | 20-61 | 16.353 |
| Rob | 22-42 | 14.149 |
| H-NS | 324-338 | 14.071 |
| TyrR | 307-328 | 13.827 |
| MarA | 364-384 | 13.799 |
| ArgR | 322-337 | 13.638 |
| PhoP | 321-337 | 13.630 |
| UxuR | 48-65 | 12.697 |
| CpxR | 54-68 | 12.515 |
| IHF | 54-66 | 12.163 |
| CRP | 307-328 | 12.161 |
| CytR | 56-95 | 12.099 |
| Nac | 23-37 | 11.952 |
| Fis | 179-199 | 11.920 |
| Lrp | 104-115 | 11.788 |
| GcvA | 308-336 | 11.640 |
| PhoB | 92-111 | 11.476 |
| Fur | 383-397 | 11.330 |
| OxyR | 8-52 | 11.221 |
| GlpR | 309-328 | 10.945 |
| AraC | 55-72 | 10.941 |
| ArgP | 378-390 | 10.769 |
| AgaR | 301-324 | 10.611 |
| FadR | 333-349 | 9.701 |
| GadE | 355-374 | 9.492 |
| TorR | 21-30 | 9.465 |
| DcuR | 4-58 | 8.841 |
| MelR | 142-159 | 8.699 |
| LacI | 230-250 | 8.621 |
| NarP | 156-162 | 8.509 |
| NarL | 231-237 | 8.481 |
| UlaR | 58-77 | 8.241 |
| NagC | 60-82 | 8.179 |
| SoxS | 321-338 | 8.095 |
| DnaA | 53-61 | 8.092 |
| GalS | 309-324 | 7.936 |
| GalR | 309-324 | 7.936 |
| RcsB | 251-264 | 7.602 |
| PurR | 309-324 | 7.584 |
| Ada | 127-154 | 7.463 |
| FruR | 140-157 | 7.405 |
| IdnR | 59-74 | 7.340 |
| FhlA | 63-102 | 6.843 |
| XylR | 20-37 | 6.722 |
| Mlc | 306-328 | 6.705 |
| ModE | 19-45 | 6.415 |
| MetJ | 304-311 | 6.375 |
| MetR | 289-312 | 6.295 |
| NorR | 146-162 | 6.290 |
| DeoR | 319-334 | 5.699 |
| GntR | 147-166 | 5.536 |